Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00324 ATGGCTAATTTTGAAAAAGATGGGGAGCCTAGGCCATCCGAAACACACGCACAACATAATGAACATTCTAGGTTTGCGAAGGTTGTATCAAGGACAAGAAGTGCATCAATTTCTATTCCTATGATCTCCATAGATCCATATGAGAGAGAAACTAGTATTATGGGACACACTGGTCAACTTCCTAGTGTAAAAAAACCCTCCTTGATGCATATTACTGGTCCATTATATGCTACCAATGGAACTGAAAATCCTCTGCATCACGCTATAGTTGTGAAAGGAAACAAAGTAGTGGAGAGCAAGACAGAAAAATTTTGCACTCTTAGTGAGAAAGTTGAAAATCATTGGAATAACAACTATGATAGAAAGAATGAACACTTGGTGAGGTCTAGGCTACTGGGAACATGTAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAAGGCCTCTATGCAAAGACTTCCAAAAGCTTCCAATGTATTTGATCCCCAGTTTCACTTCCGCAGTGCTCTTTATGGGGATGCCAAGGGTTTTGGGAGGAAATTTGTCTCTTTGTGCTCTTCATGTGTTCCTGGAGTTATGAATCCTCACTCAAAAGTTGTACAACAATGGAACAAGCTTTTGGCCATTTTTTGCATGGGAGCAATTTTTGTGGATCCATTATTTTTGTTCTTAATCTATGTACAGAAGGATGATAAATGTATAGCTATCGACTGGGACACAAGAAAAATACTTGTTTTTCTTAGAACAGTGAATGATATTGTGTATTTCTTGAACATTCTTCTCCAGTTTAGGCTGGCCTATGTTTCTCCAGAGTCAAGGGTGGTTGGTGCTGGAGATTTAGTTGATCATCCCAAGAAAATTTCACTTCATTACCTGAAGGGTTATTTTCTTTTTGACTTGTTTGTTGTATTTCCTCTTCCTCAGATAATGATATTTTTTGTCCTACCAAGCCACTTGGAGGCATCAGGAGCAAACTATGCTAAGAATCTTTTGCGTGCAGCGATCCTTGTGCAGTATATTCCCAGATTATTCAGGATCCTGCCTCTGCTAATTGGACAATCTCCAACAGGATTTATATTTGAGTCAGCTTGGGCAAATTTCATCATAAATCTTCTTATTTTCATGCTTGCTAGCCATATTGTTGGCTCTTGCTGGTATCTCTTTGGTCTACAGAGGGTTAATCAATGCTTGCGAGATGCCTGCGGCAAGTCTCATATTGATAGATGCACGACAGTCATTGATTGTGGAAGACATGGTCATATGAGAAACAACCATTCTGACCAAGCATCAGCTCTATGGAGCAACAATACAGATGCCATTGCTTGTTTGAATCCCTCACCCGGTGGTTTCCATTATGGGATCTATGTCACTGCTGTACCTCTTACTATGGAAATTAGTGTGACTGACAAATATATTTATTCTCTATTTTGGGGATTCCAGCAAATTAGTACTCTCGCTGGTAGTTTAACCCCAAGCAGGTTTTGGGGAGAAGTCCTTTTTACAATGGCCATTATAGGATTGGGACTCTTGCTTTTTGCAGTTCTCATTGGAAATATACATAACTTTCTTCAAGGTCTTGGAAGAAGAAGGCTAGAAATGCAACTTAGAGGCCGCGATGTTGAGCAATGGATGAGCCATCGTCGTTTACCAGAAGATCTAAGAAAGAAAGTACGTAGGGCTGAACAGTATAATTGGGCTGCAACAAAAGGGGTGAATGAAGAAATGATTCTTGAGAATTTGCCAGAAGATCTCCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAGAAAGTGCGAATTTTCACCCTGATGGATGAGCCTATCTTGGATGCCATTTGTGAGAGACTGAGACAGAAGACATACATAAAAGGAAGTATAATTTTGAACCAAGGTTGTCTAGTTGAGAAGATGGTCTTTATTGTGCGTGGAAAATTGGAGAGCATTGGAGAAGATGGAGTTGAAGTTCCTTTGTCTGAAGGAGATGCTTGTGGTGAAGAACTTCTGACATGGTATCTTGAACAATCTTCTGTAAGCACAGTTTTTTCACTAGCAGATGCTAAAAAAGTAAGGCTGACAGGGCAGAGGTGGCTTAGCAACAGGACAGTAAAGTGCCTAACAAATGTGGAGGCATTTTCAATCCGAGCTGCAGATCTTGAAGATGTCACAAGCCGGTTCATGAGATTCTTACGGAATCTTCGGGTTCAGGGATCTCTAAGGTATGAATCACCTTACTGGAGATCCTTGGCAGCAACTCGAATTCAGGTTGCATGGAGACATAGGAAGAAACGTAGAAATCATTATATACCTCACAATTAG 2322 0.4018 MANFEKDGEPRPSETHAQHNEHSRFAKVVSRTRSASISIPMISIDPYERETSIMGHTGQLPSVKKPSLMHITGPLYATNGTENPLHHAIVVKGNKVVESKTEKFCTLSEKVENHWNNNYDRKNEHLVRSRLLGTCNDPYCTTCPTYFKASMQRLPKASNVFDPQFHFRSALYGDAKGFGRKFVSLCSSCVPGVMNPHSKVVQQWNKLLAIFCMGAIFVDPLFLFLIYVQKDDKCIAIDWDTRKILVFLRTVNDIVYFLNILLQFRLAYVSPESRVVGAGDLVDHPKKISLHYLKGYFLFDLFVVFPLPQIMIFFVLPSHLEASGANYAKNLLRAAILVQYIPRLFRILPLLIGQSPTGFIFESAWANFIINLLIFMLASHIVGSCWYLFGLQRVNQCLRDACGKSHIDRCTTVIDCGRHGHMRNNHSDQASALWSNNTDAIACLNPSPGGFHYGIYVTAVPLTMEISVTDKYIYSLFWGFQQISTLAGSLTPSRFWGEVLFTMAIIGLGLLLFAVLIGNIHNFLQGLGRRRLEMQLRGRDVEQWMSHRRLPEDLRKKVRRAEQYNWAATKGVNEEMILENLPEDLQRDIRRHLFKFVKKVRIFTLMDEPILDAICERLRQKTYIKGSIILNQGCLVEKMVFIVRGKLESIGEDGVEVPLSEGDACGEELLTWYLEQSSVSTVFSLADAKKVRLTGQRWLSNRTVKCLTNVEAFSIRAADLEDVTSRFMRFLRNLRVQGSLRYESPYWRSLAATRIQVAWRHRKKRRNHYIPHN* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00324 773 ProSiteProfiles cAMP/cGMP binding motif profile. 602 689 IPR000595 -
Lapu4g00324 773 Gene3D Helix hairpin bin 529 594 - -
Lapu4g00324 773 SUPERFAMILY Voltage-gated potassium channels 196 531 - -
Lapu4g00324 773 SUPERFAMILY cAMP-binding domain-like 530 734 IPR018490 -
Lapu4g00324 773 Pfam Ion transport protein 206 527 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu4g00324 773 Gene3D - 202 526 - -
Lapu4g00324 773 SMART cnmp_10 602 739 IPR000595 -
Lapu4g00324 773 MobiDBLite consensus disorder prediction 1 28 - -
Lapu4g00324 773 Gene3D Jelly Rolls 600 729 IPR014710 -
Lapu4g00324 773 CDD CAP_ED 602 734 IPR000595 -
Lapu4g00324 773 MobiDBLite consensus disorder prediction 1 30 - -
Lapu4g00324 773 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 135 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00324 Lapu-Chr4 3306212 3329252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00324 20 680 Ion Channels AT3G17700 58.886 0.0 768
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00324 K05391 - gmx:112997782 1304.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00324 4 3306212 3329252 Lapu4g00324 4 3306212 3329252 ECH