Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00323 ATGGCTCGTTTTGAAAAAGAAGAGGTTCCTATGCTGTCTGAAACACGTGCTCAACTATCTGATGAAGTCGTGGATTCTAATTTCCGGAGGCTAGTATCTAGGACACGAAGTGCTTCAAGTTCGATTCCTATGGCTTCCTTGGAGTCATATGATATAGAAACTAGTCTTGTGGGACATACTGGTCCACTTCGTAGTGTGAGAAAAACCCCATTTGTGCAGATGAGTGGTCCACTGTATGCTACCCATGGAAATTCAAATCTTTCAGGACAGAATATAGCTGCAACAGGAAACAGAGTAATGGAGAGTAGGACAGAAAATTTTTCTACTTTCAATGGCGCAAATGAAAATCGTTGGGATAACGACTATGATAGAAAGAATGAACACTTAATGAGGTCTGGGCAACTGGGAATGTGTAATGATCCTTATTGTACTACTTGCCCCACTTATTTCAAGGCTGCTCAACCAAGAACTCGAAAAACTTCAGCTATATTTGATCCCAAGTTCCACCATATTTTTTATGGGGATGCCAAGGGTTTTGGAAGAAAATTTTTTTCCTTCTGCTATTCGTATGTTCCTGGAGTTATGAATCCTCATGCAAAAGTTGTACAACAATGGAACAAGATTTTGGCCATTTTTTGCTTGGTGGCAATTTTTGTTGATCCATTATTTTTCTTCTTAATCTATGTGAAGGAGGATGATAAATGTATTGCTATCAATTGGACAATGACAACAACGCTTGTTTTATTTAGAAGCATGAATGATTTGATATATTTCTTTAACATTCTTCTGCAGTTTAGGCTGGCTTATGTTTCTCGTGAGTCAATGGTAGTAGGTGCTGGAGATTTAATTGACCATCCCAAGAAAATTGCTCTTAATTATCTGAAGAGTTATCTTTTTATCGACCTATTTGTTGTGTTTCCTCTTCCTCAGATAATGATATTATCTGTCCTACCGAAATACCTGGGACCATCTGGAGCAAATTATGCTAAAAATCTTCTGCGTGCAGCAATCCTTGTGCAGTATTTTCCCAGATTATTCAGGTTTCTGCCTCTGCTAATAGGCCAGTCTCCAACAGGATTCATTTTTGAGTCAGCCTGGGCAAATTTCATTATAAATCTTCTCATTTTTATGCTATCTGGCCATGTTGTTGGTTCTTTCTGGTACCTCTTTGGTCTACAGAGGGTTAATCAATGCTTACGAAATGTCTGCAAGGATTTTGATATTCGTGGATGCTCAACATTTATTGATTGTGGCCGTGCATCTGGACCTAAGTCAGATGTGTGGAGAAAAAATGTGCATGCTGCTGCTTGTTTGAATTCCACTTCCGGTGCTTTTCCATATGGAATCTATGTAAATGCTGTACCACTTACTGTAGAAACTAAGGTGGTCAAAAAATATGTATTTGCACTGTTTTGGGGCTTCCAGCAAATCAGTACTCTGGCTGGTAATCAAACCCCAAGCTATTTTGAGTGGGAAGTCCTTTTTACGATGGCCATCATAGGTTTGGGACTCTTGCTTTTTGCGCTTCTCATTGGAAATATACAGAACTTTCTTCAGGCTCTTGGACGCAGGAGGCTAGAAATGCAACTTAGAGGTCGTGATGTTGAGCAATGGATGAGCCACCGTCGCTTGCCCTTAGATTTAAGAAGGAGAGTACGACAGGCTGAACGGTATAATTGGGCAGCAACAAGAGGGGTGAATGAAGAGATGCTTCTGGAGAATTTGCCGGAAGATCTCCAGAGAGACATAAGACGTCATCTCTTTGATTTTGTTAAAAAAGTTCGTATCTTTGCCCTGATGGATGAGCCTATCTTAGATGCAATCTGTGAGAGACTAAAACAAAAGACATACATCAAAGGAAGTAAAATTTTGAGTCAGGGTGGTCTTGTAGAAAAGATGGTCTTTGTTGTTCGCGGGAAATTGGAGAGCTTTGGAGATGATGGAACTATTGCTCCCTTATCTGAAGGGGATGCTTGTGGTGAAGAACTCCTGACATGGTATCTTGAGCATTCTTCTGTAACCACAGATGGTAAAAAAGTAAGGGTTCAAGGGCAGAGGTTGCTGAGCAATAGGACTGTAACATGCTTAACAAATGTGGAGGCATTTTCACTTCGTGCTGGAGACCTTGAGGAACTCACAATTCTCTTCACAAGATTCTTGCGGAAACCTCATGTTCTAGGAGCTCTAAGGTATGTATCACCTTATTGGAGATCCCTTGCAGCAAGCCGTATTCAGGTTGCATGGAGATACAGAAAGAAGCGTCTAAGTCGTGCTTATACCTCGCAATCAGATCAAACGTATTGA 2304 0.4058 MARFEKEEVPMLSETRAQLSDEVVDSNFRRLVSRTRSASSSIPMASLESYDIETSLVGHTGPLRSVRKTPFVQMSGPLYATHGNSNLSGQNIAATGNRVMESRTENFSTFNGANENRWDNDYDRKNEHLMRSGQLGMCNDPYCTTCPTYFKAAQPRTRKTSAIFDPKFHHIFYGDAKGFGRKFFSFCYSYVPGVMNPHAKVVQQWNKILAIFCLVAIFVDPLFFFLIYVKEDDKCIAINWTMTTTLVLFRSMNDLIYFFNILLQFRLAYVSRESMVVGAGDLIDHPKKIALNYLKSYLFIDLFVVFPLPQIMILSVLPKYLGPSGANYAKNLLRAAILVQYFPRLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLSGHVVGSFWYLFGLQRVNQCLRNVCKDFDIRGCSTFIDCGRASGPKSDVWRKNVHAAACLNSTSGAFPYGIYVNAVPLTVETKVVKKYVFALFWGFQQISTLAGNQTPSYFEWEVLFTMAIIGLGLLLFALLIGNIQNFLQALGRRRLEMQLRGRDVEQWMSHRRLPLDLRRRVRQAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFDFVKKVRIFALMDEPILDAICERLKQKTYIKGSKILSQGGLVEKMVFVVRGKLESFGDDGTIAPLSEGDACGEELLTWYLEHSSVTTDGKKVRVQGQRLLSNRTVTCLTNVEAFSLRAGDLEELTILFTRFLRKPHVLGALRYVSPYWRSLAASRIQVAWRYRKKRLSRAYTSQSDQTY* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00323 767 Gene3D Jelly Rolls 594 718 IPR014710 -
Lapu4g00323 767 Pfam Ion transport protein 207 524 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu4g00323 767 SUPERFAMILY Voltage-gated potassium channels 200 524 - -
Lapu4g00323 767 Gene3D Helix hairpin bin 523 588 - -
Lapu4g00323 767 ProSiteProfiles cAMP/cGMP binding motif profile. 596 664 IPR000595 -
Lapu4g00323 767 SUPERFAMILY cAMP-binding domain-like 524 721 IPR018490 -
Lapu4g00323 767 CDD CAP_ED 596 712 IPR000595 -
Lapu4g00323 767 Gene3D - 206 521 - -
Lapu4g00323 767 SMART cnmp_10 596 731 IPR000595 -
Lapu4g00323 767 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 138 759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00323 Lapu-Chr4 3305279 3329252 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00323 5 674 Ion Channels AT3G17700 61.630 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00323 K05391 - gmx:100794895 1323.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00323 4 3305279 3329252 Lapu4g00323 4 3305279 3329252 ECH