Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00322 ATGGGCCATGTTGTTGGTTCAAGCTGGTATATATTTGCCCTAGAGAGAGTTCGTGATTGCTTGTTCAATGCCTGCCACAATATTAATTCTAAGACTGAATGCTTAAAATTTACTTCTTGTAGCAGTGGCCATGCACCTGCCCTGTGGAAACACAATGAAAATGTCACTGCTTGTTTGAGTTCCACTTCTCCTATTAAATATGGAATCTATCAAGATGCTTTACCACTTATTACAGAAACTAGTGTAGCTAAAAAATTTGCATTTTCAATGTTTTGGGGCTTTAAGCAAATCATTACTCTAGCTGATAATCTAAACCCAAACTACAAATTTCTGGGGGAAGTCTATTTTACAATGGTCATCATGGGATTGGGAGTTTGCATTTTTACACTTCTCGTTACAAACATACAGAAGCTTCTTCAGGATGTTGAAACTAGGAGTACAAAAATGGAACTTAGAGATCGTGATGTTGAGCAATGGATGAACAATCGCAGCTTACCAGTAGCTTTAAGAAAGAGAATACGAATGGCTGAAGAGTATAATTGGGCAGCAACAAGGGGAGTGGATGAAGAAGCGATTATGGAGACTTTGCCAGAAGATCTCCAGAGAGACATAAGACGCCATCTCTTCAAATTTGTGAAGAAAGTTCAAATATTTGCCCTAATGGACGAGCCGATCTTAGATGTCATTTGTGAGAGATTAAAACCAAAGAGATACGTCGCAGGAAGTAAAATTTTGAGGCAGAGGAGTGTTGTGCAAAAGATGGTCTTTGTTGTGCGTGGGAAGTTAGAGAGCCTAGCAGCAGATGGAACTAGACTTCTCTTATCAGCTGGTGATGCTTGTGGAGAAGAACTTCTCGCGTGGTATCTTGAGCATGTTTCTGTAAGGACAGATGGTAAAAAGGTAAGGCTTCCTGGAGAGAGATTGGTTAGCAACCGTTCAATAAGGTGCTTAACAAATGTGGAGGCATTTTCACTTGGCCTTGCAGACCTTGAGGATCTCTTTATTCTTTTCTCAGGATTCTTGCAGAACCCTCGTGTTCAAGGAGCAATAAGGTATCAATCGCCTCATTGGAGATTAGATGCAGCAAAACGGATTCAGGCAGCATGGAGAAAGAGGAAGAGAAGATGTTCTCTTCATACTGATAGTATTAGCCATTCAAATTGA 1164 0.4038 MGHVVGSSWYIFALERVRDCLFNACHNINSKTECLKFTSCSSGHAPALWKHNENVTACLSSTSPIKYGIYQDALPLITETSVAKKFAFSMFWGFKQIITLADNLNPNYKFLGEVYFTMVIMGLGVCIFTLLVTNIQKLLQDVETRSTKMELRDRDVEQWMNNRSLPVALRKRIRMAEEYNWAATRGVDEEAIMETLPEDLQRDIRRHLFKFVKKVQIFALMDEPILDVICERLKPKRYVAGSKILRQRSVVQKMVFVVRGKLESLAADGTRLLLSAGDACGEELLAWYLEHVSVRTDGKKVRLPGERLVSNRSIRCLTNVEAFSLGLADLEDLFILFSGFLQNPRVQGAIRYQSPHWRLDAAKRIQAAWRKRKRRCSLHTDSISHSN* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00322 387 Gene3D Helix hairpin bin 143 208 - -
Lapu4g00322 387 Gene3D Jelly Rolls 215 338 IPR014710 -
Lapu4g00322 387 ProSiteProfiles cAMP/cGMP binding motif profile. 217 285 IPR000595 -
Lapu4g00322 387 CDD CAP_ED 217 334 IPR000595 -
Lapu4g00322 387 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 2 375 - -
Lapu4g00322 387 SUPERFAMILY cAMP-binding domain-like 146 339 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00322 Lapu-Chr4 3295972 3301566 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00322 2 294 Ion Channels AT3G17700 53.199 1.56e-99 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00322 K05391 - gmx:100781973 481.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00322 4 3295972 3301566 Lapu4g00322 4 3295972 3301566 ECH