Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00320 ATGGCTAATTTTGAGAATGACAAGCGGCCAATGCTGTCAGATACCGATGTACAACCATACGATGAACCCTTGGATTCTAAATTCCGAAGGATAGTAACCAGGACTCAAAGTGCTTTAATTTCTATTCCTACGAGCTCCTTGGAGTCATATGAGAAAGAAGCTAGTCTTGTGGGACATACTGGTCCACTTCAGAGCAAGAGAAAAACACCCTCTATGCATATGAGTGGTCCATTATATGCTACCACTGGAACTGGAAATCTTTTTCAGAAGCATATTGTATCGGGAAACAAAGCAGATGACAGAAAGACAGATAATTTTGCTAGTCTCCATGGCTCAAGTTCAAATTACCGAAATAATGACTATGATATAAAAAATGAACACTTGCTAAGGTCTGGTCAACTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAATGCTTCTCAGCAAAGAAATCCAAAACCTTCAACTAGATGGGATCCAAAGTTCCATAATGCTCTTTATGGGGATGCCAAGAGTTTTGTGAGGAAACTTCTGTCCTTCTCCTCTTCTTATGTTCCTGGAGTTATGAACCCTCACGCTAAAGTTGTACAAAAGTGGAACAAATTTTTGGCCATTGTTTGCTTAATTGCTATTTTTGTGGATCCATTGTTTTTCTTTTTACTCTATGTGGAGAAGGATAATAAATGCATTGTTATCAACTGGCCATTGACAACAGCACTTGTTTTATTTAGATGCGTGAACGATTTTGTTTATTTCCTTAACATTCTTCTCCAGTTTAGGTTAGCTTATGTTTCTCGTGAGTCGAGGGTGGTTGGTGCTGGAGAATTAGTTGACCATCCAAAGAAAATTGCACTTCATTACCTAAAGGGTTATTTCCTCATTGACTTATATGTTGTATTTCCTCTTCCTCAGATAATGTTATTGTTTGTCCTACCAAATTCCTTGGAGGGAGCAAATTATGCCAAGAATCTTCTGCGTGCAGCGATATTAGTGCAATATTTCCCCAAGTTATTCAGGTTTCTGCCCCTGCTGATAGGCCAATCTCCAACAGGATTCATATTTGAGTCAGCCTGGGCAAATTTTATTATAAATCTTCTCATTTTTATGCTTGCTAGTCATGTTGTTGGCTCTTGCTGGTACCTCTTCGGTCTTCAGAGGGTCAATCAGTGTTTGCGGAATGCTTGCCATAGGTCTAGTATAACTGGATGCATGAAGTTCATTGATTGTGGACGTGGCCATACTGACTTCACTTCAGATCAGTGGAATAACAATACTGATGCCGTTGCTTGTTTGGATCCCTCTTCTAATAGTTTCACTTATGGGATTTATGAGAATGCTGTACCACTTACTACAGAAACTAACATGGTCAACAAATACGTGTATTCCCTTTTTTGGGGATTCCAGCAAATCAGTACTCTGGCTGGTAATCTGGTTCCTAGCTATTTTCTGTGGGAAGTCCTTTTTACTATGGCCATCATAGGATCGGGACTCTTACTTTTTGCAATTCTCATTGGTAACATACAGAACTTTCTACAGGCTCTTGGACGGAGGAAGCTGGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGGAGGTTACCAGAAGATCTAAGAAGGAGAGTAAGACAGGCTGAACGGTATAATTGGGCTGCAACTAGGGGGGTGAATGAAGAAATGCTTATGGAGAATTTGCCAGAAGATCTGCAGAGAGACATAAGACGCCATCTCTTCAATTTTGTTAAGAATATTCGGATTTTTGCTCTGATGGATGAGCCTATATTAGATGCCATTTGTGAGAGACTAAGACAAAAGACATACATCAAAGGAAGTAGAATTCTAAGTCATAGTGGTCTGGTAGAAAAGATGGTATTCGTGGTGCGTGGCAAATTGGAGAGCATTGGAGAAGATGGGACCAGAAGTCCTCTATCTGAAGGGGATGCTTGTGGTGAGGAACTTCTGACATGGTATCTTGAACATTCTTCAGTCAGCACAGATGGTAGAAAAGTAAGGCTTCCAGGACAGAGATTGGTTAGCAACAGGACAGTTAGGTGCTTAACAAATGTGGAGTCATTTTCACTCTCTGCTTCAGACCTTGAAGAAGTCACAATCCTTTTCACAAGATTCTTGCGGAGTCCATGCGTTCAAGGAGCCCTAAGGTATGAGTCACCTTATTGGAGGTCCCTTGCTGCGACCCGCATTCAAGTTGCATGGAGATACAGGAAGAAACGTCTAAGTCGTGTTAATTCCTCACCATCAGATTGA 2289 0.4098 MANFENDKRPMLSDTDVQPYDEPLDSKFRRIVTRTQSALISIPTSSLESYEKEASLVGHTGPLQSKRKTPSMHMSGPLYATTGTGNLFQKHIVSGNKADDRKTDNFASLHGSSSNYRNNDYDIKNEHLLRSGQLGMCNDPYCTTCPTYFNASQQRNPKPSTRWDPKFHNALYGDAKSFVRKLLSFSSSYVPGVMNPHAKVVQKWNKFLAIVCLIAIFVDPLFFFLLYVEKDNKCIVINWPLTTALVLFRCVNDFVYFLNILLQFRLAYVSRESRVVGAGELVDHPKKIALHYLKGYFLIDLYVVFPLPQIMLLFVLPNSLEGANYAKNLLRAAILVQYFPKLFRFLPLLIGQSPTGFIFESAWANFIINLLIFMLASHVVGSCWYLFGLQRVNQCLRNACHRSSITGCMKFIDCGRGHTDFTSDQWNNNTDAVACLDPSSNSFTYGIYENAVPLTTETNMVNKYVYSLFWGFQQISTLAGNLVPSYFLWEVLFTMAIIGSGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRQAERYNWAATRGVNEEMLMENLPEDLQRDIRRHLFNFVKNIRIFALMDEPILDAICERLRQKTYIKGSRILSHSGLVEKMVFVVRGKLESIGEDGTRSPLSEGDACGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFSLSASDLEEVTILFTRFLRSPCVQGALRYESPYWRSLAATRIQVAWRYRKKRLSRVNSSPSD* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00320 762 SUPERFAMILY Voltage-gated potassium channels 199 522 - -
Lapu4g00320 762 MobiDBLite consensus disorder prediction 1 20 - -
Lapu4g00320 762 Gene3D - 206 519 - -
Lapu4g00320 762 Pfam Ion transport protein 204 521 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu4g00320 762 Gene3D Jelly Rolls 592 716 IPR014710 -
Lapu4g00320 762 Gene3D Helix hairpin bin 521 586 - -
Lapu4g00320 762 ProSiteProfiles cAMP/cGMP binding motif profile. 594 662 IPR000595 -
Lapu4g00320 762 CDD CAP_ED 594 710 IPR000595 -
Lapu4g00320 762 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 137 754 - -
Lapu4g00320 762 SUPERFAMILY cAMP-binding domain-like 522 714 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00320 Lapu-Chr4 3261853 3273126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00320 5 672 Ion Channels AT3G17700 61.004 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00320 K05391 - gmx:100795427 1417.52