Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00319 ATGGCTAATTTTGAAAGAGCTGAGGTGCCAATTCTATCAGATAGTTATCCCCAACTACCAATCGAACTAGTGGATTCTAAATTCCCAAGGCATGTACCTAGGACTCGAAGTGTATCAATTTCTATTCCCACGACACCAGAGCCATATGAAAGAGATACTAATCTTGTGGGATACACTGGTCCCCTACGGATTCAGAGAATAACTCCATTTAATCAGATGAGTGGTCCATTGTATGTTACTAATACACCTGGAAACCTTTTCCGGCAGAATAAAGTGGCACCCGAGTCACAAGCAGAAGAAATTAAGACAGAAAATTTTTCTTCATGCTGTGGCATGATGGAAAATGATTTGCAGAACAACTATGCTAGCAAGAATGAACATTTAGTTAGGTCCGGTCCACTGGGAATGTGTAGTGATCCATATTGTACAACGTGCCCAACTTACTTCAAGGCTACTCAGCAAAGTAATTCAAATGCTTCGGGTATATTTAATCATAAGTTTCGCAATAATCTTTATGAGGATGCCAAGGATTGGGCGAGAAGATTTTTTACTTTCTTGATTCCTCATGTTCCTAGAGTTATGAATCCTCACAATAAGCTTGTACAACAATGGAATCAATTTTTTGCAATTTGTTGCTTGGTGGCAATTTTTGTGGATCCGTTATTTTTCTTCTTGCTATCTGTGCAGAAGGACAATAAATGTATTGTTATAAACTGGCCTTTCACAAAAGTTCTTGTTGCACTTAGAAGCATGAATGATTTCATACACTTCCTAAACATTGTTCTTCAGTTTAGGTTGGCTTATGTGGCTCCGGAGTCTAGGGTGGTTGGTGCTGGGGAGTTAGTTGACCATCCTAAGAAAATAGCTGTTCATTACTTTAAGACATCTTTTTTTATTGACTTATTTGTTGTTCTTCCACTTCCTCAGATATTCATATTGTTTGTCTTACCAAAGCACTTGGGGACAGGGTCATCAGGAGCAAATTATGCAAATAACATTTTGCGTATTGTGATCCTCGTTCAGTATATTCCCAGATTGTGTAGGTTTCTTCCTATGCTATTTTCTCCAGCTGGATTCGTATTTGAGTCTCCGTGGGCAAATTTCTTTATCAATCTTTTTACCTTTATACTGTCTGGCCACATTGTTGGGTCCTGGTGGTACCTCTTCAGTTTGCAGCAAATTAGTACACTGACTGGGACTTTAACCCCTAGCTATTATGTTCCCGAAATCCTTTTCTCTAAGGCCATTCTTGGGTCAGGACTGTTGTTGTTTGCTCTTCTCATTGGAAACATACAGAACATTCTTCAGGCTCTTGGACGGAGGAATCTAGAGATGTCACTCAGACGACGTGATGTTGAGCAATGGATGAGCCATCGGCGCTTAGCAGACGATCTAAGAAGATTCCATTCCTCTTATATGATTGGTCTGTCGTGTAGGAGAGTGCGACAGGCTGAACGTTATAACTGGGCTGCGACAAGGGGGGTGAATGAAGAAATGCTCCTGGAGAATTTGCCAGAAGACCTCCAAAGGGAAATTAGACGTCACCTCTTCACATTTATTAAGAAAGTTCGAATTTTTGCCTTGTTGGATGAGCCTATCTTGGATGCCATATGCGAGAGGCTAAGACAAAAAACATATATCAAAGGAAGCAAAATTTTGTATGATGGTGGTTTGGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAGAGCGTTGGCGAAGATGGAATCAGTGCTCCCCTTTATGAAGGGAGTGTCTGTGGTGAAGAGCTTCTGACATGGTGTCTTGAGCATCCCTTAGCAAGCAAAGGTTGCAAAAGAGCAAGGATTCCTAGGCAAAAGTTGGTTAGTAACAGAAGAGTATGTTGCTTAACAAATGTGGAGGCATTTTCCCTTAGGGCAGCAGACCTTGAAGAAGTTACAGGTCTATTTGCAAGATTCTTTAGGAGTCCCCGTGTTCAAGGAGCCATAAGGTATGAATCACCTTATTGGAGATGCTTTGCAGCAACAAGCATTCAGGTTGCATGGAGATACAGAACCAAATGTCTTAGTCGTGCTAAAACTACACAATCAAAGGAAACATAA 2088 0.4076 MANFERAEVPILSDSYPQLPIELVDSKFPRHVPRTRSVSISIPTTPEPYERDTNLVGYTGPLRIQRITPFNQMSGPLYVTNTPGNLFRQNKVAPESQAEEIKTENFSSCCGMMENDLQNNYASKNEHLVRSGPLGMCSDPYCTTCPTYFKATQQSNSNASGIFNHKFRNNLYEDAKDWARRFFTFLIPHVPRVMNPHNKLVQQWNQFFAICCLVAIFVDPLFFFLLSVQKDNKCIVINWPFTKVLVALRSMNDFIHFLNIVLQFRLAYVAPESRVVGAGELVDHPKKIAVHYFKTSFFIDLFVVLPLPQIFILFVLPKHLGTGSSGANYANNILRIVILVQYIPRLCRFLPMLFSPAGFVFESPWANFFINLFTFILSGHIVGSWWYLFSLQQISTLTGTLTPSYYVPEILFSKAILGSGLLLFALLIGNIQNILQALGRRNLEMSLRRRDVEQWMSHRRLADDLRRFHSSYMIGLSCRRVRQAERYNWAATRGVNEEMLLENLPEDLQREIRRHLFTFIKKVRIFALLDEPILDAICERLRQKTYIKGSKILYDGGLVEKMVFIVRGKLESVGEDGISAPLYEGSVCGEELLTWCLEHPLASKGCKRARIPRQKLVSNRRVCCLTNVEAFSLRAADLEEVTGLFARFFRSPRVQGAIRYESPYWRCFAATSIQVAWRYRTKCLSRAKTTQSKET* 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00319 695 ProSiteProfiles cAMP/cGMP binding motif profile. 525 603 IPR000595 -
Lapu4g00319 695 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 391 686 - -
Lapu4g00319 695 Gene3D Helix hairpin bin 444 517 - -
Lapu4g00319 695 SMART cnmp_10 525 660 IPR000595 -
Lapu4g00319 695 SUPERFAMILY cAMP-binding domain-like 441 646 IPR018490 -
Lapu4g00319 695 Pfam Ion transport protein 204 392 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lapu4g00319 695 SUPERFAMILY Voltage-gated potassium channels 196 442 - -
Lapu4g00319 695 CDD CAP_ED 525 641 IPR000595 -
Lapu4g00319 695 Gene3D Jelly Rolls 523 647 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00319 Lapu-Chr4 3248576 3257778 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00319 384 605 Ion Channels AT3G17700 67.117 6.51e-87 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00319 K05391 - egr:104456404 675.626