Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00316 ATGGTTATCACATCCACTGCTACACACCCAGATGAAAAAGATGAGCATCTATCATCGACTTTTGCTTCCAGATATGTGCGTCAACCTATTCCCAAGTTCAAGATGCCAGATAATTCCATACCAAAGGATGCAGCTTATCAGTTAATAAACGATGAGTTGATGTTGGATGGCGCACCAAGGCTCAACTTGGCCTCATTTGTGACCACTTGGATGGAGCCGGAGTGTGAAAAGCTCATAATGGCCTCACTTAACAAGAACTATGTTGACATGGATGAGTACCCTATCACCACTGAGCTTCAGAATCGGTGTGTCAATATAATAGCAAATCTATTTCATGCTCCTCTAAGTAAAGAAGAGACTGCAGTAGGTGTGGGAACTGTGGGATCATCTGAGGCAATAATGTTAGCAGGTTTGGCTTTTAAAAGGAAATGGCAGACAAAGAGAAAAGCCGAAGGCAAACCATATGATAAGCCCAACATAGTTACTGGGGCTAATGTGCAGGTTTGCTGGGAAAAATTTGCAAGGTACTTTGAGGTGGAGCTCAAGGAAGTGAAACTCACAGAGGGATACTATGTGATGGACCCTGTGAAAGCAGTTGAAATGGTGGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGGTCAACTATGACTGGAGAGTTTGAGGATGTGAAACTTCTCAATGAACTTCTCGCTGCAAAGAACAAAGAGACAGGTTGGGATACCCCAATTCATGTAGATGCAGCCAGTGGGGGGTTTATTGCCCCATTTCTGTATCCTGATCTAGAGTGGGATTTTCGTTTGCCATTGGTGAAAAGCATCAATGTCAGTGGTCACAAGTATGGTCTTGTCTACCCTGGTGTTGGTTGGGTTGTCTGGAAGAGTCACGATGATTTGCCAGATGAACTTGTTTTTCACATAAATTATCTTGGATCTGATCAGCCAACTTTCACATTGAATTTCTCCAAAGGATCCAGTCAAATTATTGCTCAATATTACCAATTTATTCGGCTTGGCTTTGAGGGTTACAAAAATATCATGGAAAATTGCTGGGACAATGCAAGAACTCTGAGGAAAGGAATTGAGAGAATAGGGAGGTTTAACATCATCTCCAAGGACATAGGGGTGCCACTAGTGGCCTTCTCCTTGAAAGACAGTAGCCAACACACAGTGTTTGAGATATCAGACCAGCTGAGAAAATTTGGCTGGATAGTTCCAGCCTACACAATGCCACCAGATGCGCAGCACATCGCGGTCCTCCGGGTGGTGGTGAGGGAGGATTTCAACCATGGCTTGGCTGAGAGACTTGCTGCAGACATAGACAAGGTTGTGAAGCTCTTGGACACACTTCCTAGCCCCCTCACAACCAATGCTGCTCACGTCACAGCCATCACCAGTGAGACTAATGAGAAGGTCAAGAAGAGTGCAATAGACACTCAGAAAGAGATTTCTATCTACTGGAAACGACTTCTGGAGGGGAAGAGACTTGGAGCATGCTAG 1500 0.446 MVITSTATHPDEKDEHLSSTFASRYVRQPIPKFKMPDNSIPKDAAYQLINDELMLDGAPRLNLASFVTTWMEPECEKLIMASLNKNYVDMDEYPITTELQNRCVNIIANLFHAPLSKEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEGYYVMDPVKAVEMVDENTICVAAILGSTMTGEFEDVKLLNELLAAKNKETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWKSHDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCWDNARTLRKGIERIGRFNIISKDIGVPLVAFSLKDSSQHTVFEISDQLRKFGWIVPAYTMPPDAQHIAVLRVVVREDFNHGLAERLAADIDKVVKLLDTLPSPLTTNAAHVTAITSETNEKVKKSAIDTQKEISIYWKRLLEGKRLGAC* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00316 499 FunFam Glutamate decarboxylase 364 451 - -
Lapu4g00316 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lapu4g00316 499 SUPERFAMILY PLP-dependent transferases 10 446 IPR015424 -
Lapu4g00316 499 FunFam Glutamate decarboxylase 6 68 - -
Lapu4g00316 499 Gene3D - 69 363 IPR015421 GO:0003824
Lapu4g00316 499 Gene3D - 364 451 - -
Lapu4g00316 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lapu4g00316 499 NCBIfam glutamate decarboxylase 19 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lapu4g00316 499 FunFam Glutamate decarboxylase 69 363 - -
Lapu4g00316 499 CDD DOPA_deC_like 62 442 - -
Lapu4g00316 499 Gene3D - 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00316 Lapu-Chr4 3224211 3229102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00316 7 499 Calmodulin-binding Proteins AT3G17760 78.831 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00316 K01580 - gmx:100783047 933.324