Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00312 ATGTGCAGTAGAGGCCATTGGAGGCCAGCTGAGGATGAGAAGCTTCGAGAATTGGTGGAACGCTATGGACCACATAACTGGAACGCCATAGCTGAGAAGCTTCGAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTCAATCAATTGGATCCAAGAATAAACAGAAGTCCTTTTACAGAGGAAGAAGAAGAGAGACTTCTTGCTTCTCACAGGATTCATGGGAATAGATGGGCTGTGATTGCAAGACACTTCCCAGGACGAACTGATAACGCTGTCAAAAACCATTGGCATGTGATGATGGCAAGGATTCGGAGAGAAAGGTCCAAAGTTTATAACACAAAACAGCCACTTTTTCCTCCAAACATTGAGACCAATTTTGAGACTTCTATCCCTTCTTTTGTTGAGAAGTATTATGAAAAGTTCAGCCACCACCACCCTTGTGTCACACACACACCTTTTCAGTTTGCCAAGAAGTTTCACTTTCAAGATCCAAGTTCTGCTTCCACAGTGCCTCCAGAGAAGAGTCAATCAGTAGAGTTCTATGATTTTCTTCAAGTAAATACCGATTCCAATAAGAGTGAAGTGACAGACATAGCCAGAAGAGATGAAGAGGAAGTGAGTCAAGATGCTGTGGAAGTGAAGAACATTGGTGTTCCATTCATTGATTTTTTGTCTACTGGAACTTGCTAA 693 0.4257 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKVYNTKQPLFPPNIETNFETSIPSFVEKYYEKFSHHHPCVTHTPFQFAKKFHFQDPSSASTVPPEKSQSVEFYDFLQVNTDSNKSEVTDIARRDEEEVSQDAVEVKNIGVPFIDFLSTGTC* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00312 230 FunFam MYB transcription factor 4 55 - -
Lapu4g00312 230 Gene3D - 57 117 - -
Lapu4g00312 230 Gene3D - 4 55 - -
Lapu4g00312 230 Pfam Myb-like DNA-binding domain 7 67 - -
Lapu4g00312 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Lapu4g00312 230 PANTHER MYB PROTEIN-RELATED 4 169 - -
Lapu4g00312 230 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Lapu4g00312 230 SMART sant 55 103 IPR001005 -
Lapu4g00312 230 SMART sant 3 52 IPR001005 -
Lapu4g00312 230 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Lapu4g00312 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Lapu4g00312 230 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Lapu4g00312 230 CDD SANT 58 101 IPR001005 -
Lapu4g00312 230 CDD SANT 7 48 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00312 Lapu-Chr4 3191764 3194868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00312 1 228 MYB Transcription Factor Family AT1G17950 57.085 7.13e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu4g00312 Myb_DNA-bind_6 8.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00312 K09422 - gmx:100811746 402.905