Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00301 ATGTTAGCGAATAACTTATCTCCATCGTCAGTTCCCACTTCTGAGCCTTTTCCCTGCACTGAAAATGGCACTGCCACCAATAAAAGGAAGAGAAGGCCCGCAGGAACACCAGATCCAGATGCAGAGGTGGTGTCCCTCTCTCCAAAGACTTTGTTGGAATCGGATCGTTATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTTCAGATGCATAGGAGGAGGCACAAGGTGCCATGGAAGCTATTGAAGAGGGAGACACCAGTGGTGAGGAAGAGAGTGTTTGTGTGTCCTGAACCAACTTGCTTGCACCATGACCCCTGTCATGCCTTGGGTGATCTTGTTGGGATAAAGAAGCATTTCAGGAGGAAGCACAGCAATCACAAGCAATGGGTCTGTGAAAGATGCTCCAAAGGCTATGCAGTGCAGTCTGATTACAAAGCACATCTCAAAACGTGTGGCACCCGGGGCCACTCCTGTGATTGTGGCCGAGTTTTCTCAAGGGTGGAGAGTTTCATTGAGCACCAAGATGCTTGCAACATGGGGAGGCTCAGGCCAGAATCTCAGCCACTTCAACCATCTGCATGCCTTTCTAGAACAGCCTCAAGCCCAAGTCCTTCAAGTGAAACCAATTTCAGCACAGCTCCTTGGCCAACAAGAATGATAATACCAAAGCCAACAGAACCACCCACAATTTTCATGAATAACCCTACTGCTGCTATCACCACTGCTGAAACCTCATCCAAGAACAACAAACTCCACCCCAACTTGGATCTCCAACTCTCAACTCCCACCACCAACAACAATAACAACACTTCAAATGTCGCAAACCCCATTGATGTTGTAATATCAACATCATTATTATCATCTAAGAGGGATCATCATGAGAACCACTCAACCCATTTGCAACTCTCAATTGGGTCATCAGATGCGAGTGAGAAAAATGAATCAAACAGGAACTCATCAGAGAAGAGCAGCAACAGCAACAATGAGAAGCAGTCCAACATGGCCTTATTGAGGGTTCAAGAGCAAGCAAGGGAACACTTGAGGATAGCCATGGCTGAGAAAGCATATGCAGAGGAAGCAAGGAAGCAAGCCAAGAGGCAGATTGAACTTGCGGAACAAGAGTTCACAAACGCCAAGAGGATAAGACAACAAGCACAAGCCGAACTCGACAAGGCCTACGCCTTGAAAGAGCATGCAATGAAGCAAATCAACTCCACCATGCTCCAAATCACTTGCCACGCTTGCAAACAACAATTTCAAGCTCGAAATGCAACCCCCGACGAGAATTCCTTGGTGTTGAGCTACGTGTCTTCTGCTATAACCACAGAAGGAGGAGAGGTAGAAAACGATAATGGAAAAGATCATGTCAAAGACAACTAA 1395 0.4695 MLANNLSPSSVPTSEPFPCTENGTATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRPESQPLQPSACLSRTASSPSPSSETNFSTAPWPTRMIIPKPTEPPTIFMNNPTAAITTAETSSKNNKLHPNLDLQLSTPTTNNNNNTSNVANPIDVVISTSLLSSKRDHHENHSTHLQLSIGSSDASEKNESNRNSSEKSSNSNNEKQSNMALLRVQEQAREHLRIAMAEKAYAEEARKQAKRQIELAEQEFTNAKRIRQQAQAELDKAYALKEHAMKQINSTMLQITCHACKQQFQARNATPDENSLVLSYVSSAITTEGGEVENDNGKDHVKDN* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00301 464 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Lapu4g00301 464 Coils Coil 352 407 - -
Lapu4g00301 464 MobiDBLite consensus disorder prediction 235 279 - -
Lapu4g00301 464 MobiDBLite consensus disorder prediction 194 220 - -
Lapu4g00301 464 MobiDBLite consensus disorder prediction 1 44 - -
Lapu4g00301 464 Gene3D Classic Zinc Finger 119 195 - -
Lapu4g00301 464 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Lapu4g00301 464 Gene3D Classic Zinc Finger 35 97 - -
Lapu4g00301 464 MobiDBLite consensus disorder prediction 1 24 - -
Lapu4g00301 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Lapu4g00301 464 MobiDBLite consensus disorder prediction 193 279 - -
Lapu4g00301 464 MobiDBLite consensus disorder prediction 304 337 - -
Lapu4g00301 464 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Lapu4g00301 464 MobiDBLite consensus disorder prediction 293 337 - -
Lapu4g00301 464 SMART c2h2final6 134 161 IPR013087 -
Lapu4g00301 464 SMART c2h2final6 98 128 IPR013087 -
Lapu4g00301 464 SMART c2h2final6 57 79 IPR013087 -
Lapu4g00301 464 FunFam protein indeterminate-domain 12-like 36 104 - -
Lapu4g00301 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 403 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00301 Lapu-Chr4 3066455 3069900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00301 20 454 C2H2 Transcription Factor Family AT2G01940 57.494 8.71e-155 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu4g00301 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00301 K25871 - gmx:100800187 809.29