Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00298 ATGGAAAACTCTTCATCATCTTCATCTTCAAATTCTGTGTATCGAGAGTGTCTCCGCAACCATGCAGCGAGTCTCGGCAGCTACGCTACGGATGGTTGTGGAGAGTTTACTCTCGATATAGACGCCTCATCTTCCTCCCTTCAGTGTGCAGCCTGCGGTTGTCACCGCAACTTCCACCGCAAGGTGACCTGTCCTGCTGTGGAAGGTCTGCAGGGTGGAGGGAGTGGAGATATGATGGAGTATTCTGGAGGAGGAGACGTTGGAAGAGTGGAGATGGGGGAGAGGAGCAGCAGGAAGAGGTTCAGGACGAAGTTCAGTGCAGAGCAGAAGGAGAAGATGCTGGGGTTTGCAGAGAAGCTGGGGTGGAAGCTGCAGAGGAAAGAGGTGGATGATGAGATTGAGAGGTTTTGTAAAAGTGTTGGAGTGACTAGACAGGTTTTCAAGGTGTGGATGCATAACCATAAGAACAACTCTAACTCATCTAATTCTTCTGCTAATATCTCTTCTCTCACTCAGTGA 519 0.4952 MENSSSSSSSNSVYRECLRNHAASLGSYATDGCGEFTLDIDASSSSLQCAACGCHRNFHRKVTCPAVEGLQGGGSGDMMEYSGGGDVGRVEMGERSSRKRFRTKFSAEQKEKMLGFAEKLGWKLQRKEVDDEIERFCKSVGVTRQVFKVWMHNHKNNSNSSNSSANISSLTQ* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00298 172 Pfam ZF-HD protein dimerisation region 13 63 IPR006456 -
Lapu4g00298 172 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 7 157 - -
Lapu4g00298 172 FunFam Zinc-finger homeodomain protein 2 87 160 - -
Lapu4g00298 172 NCBIfam homeobox domain, ZF-HD class 98 156 IPR006455 -
Lapu4g00298 172 Gene3D - 85 162 - -
Lapu4g00298 172 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 14 62 IPR006456 -
Lapu4g00298 172 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 14 61 IPR006456 -
Lapu4g00298 172 SUPERFAMILY Homeodomain-like 91 157 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00298 Lapu-Chr4 3027509 3028027 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00298 14 156 ZF-HD Transcription Factor Family AT4G24660 44.253 2.68e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lapu4g00298 ZF-HD_dimer 3.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00298 - - vun:114182488 307.375