Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00292 ATGCCCCAGAATAAGATTTTCGGAGACCAATCATCGAATCAGATTCCTGATCTTTCCCTTCACATTAGCCTCCCAAACAGTGCTCCTTCTTCAATTTGCACTGGAGGGGATTCACCCTTTGATACATGGCCACAACAAGCAGATGACGATGACGATGCTGAAGGCCTCAAATCCCACAGTGATGGTTCAATCAAAGGTTGTAGCCCTTACCACACAGACACACAACTGTCTTTAGCCAACTCTACAAGTGCTGTCACTACTACTCCCTCTGAGGTTGAAAGCACCTGGAGGAAGAGAAACTTTGTTAGACTCAGTCATCATGGGGTTTCTGAGGGTCAAATAAGACTCATCAATGGAATCCCTCTCTACAGTAACCTTTCTTCTTTGGACAACAGCAGTACTGTTCCCACAATAGAGAGAAGCCCCACCAACAAGTTTTCCTTTTCTTCAATATATGCAGTTTCACATCCTCCTTATTCTGCCAATTCGGCTCCTAACTATAGTTATAATGGTGCTGTTGGGGGTGTAGCAGGAGAACCAATCTCAAGGTTTCATGATATAACCATGGAGAGTACTCCAAGGCCGCAACAGTTTCAGTACTTTGATTACCCTCAGCAGCAGCAGCATCATCAGCATCATCAGCATCATCAGCAGTTTGGGAATGTTACAAATTTTGGAGCTTCTGAATTTTCCAATGGATTTGTGAGGTCAAGAATGTTGCCAAGGCAACAAAGTAATAAGAGGAACATGAGGGCTCCAAGAATGCGTTGGACTAGTTCTCTTCACAATCGCTTTGTTCATGCTGTCGAACTACTTGGTGGCCATGAAAGGGCTACTCCTAAGTCAGTTTTGGAACTAATGGATGTCAAAGATCTAACACTAGCTCATGTCAAGAGCCATTTGCAGATGTATCGGACTGTTAAGAACACTGACAAACCTGCAGCTTCTTCAGATGGGGATGAGGATTTCATGTCCCTAACAGTCCCAAATAATCAAAATAAGAATTTTTTACCCAATCAGAGAGGAGCTCCAAATGCATCCATGGATCATGATATGGGCTACACTTCCAGCAATCTATGGGCTAATTCCTCTACCAGTAGAGGAGCACGGATTCAAGCTAATTCCCGTGATTTGGATGAGCTTAGTCCCCAAGAAATCCTATCATCTCAGCATTCTGGGAAACCTTCTGAGGGAAACAACTGCATAACAAGAAGCTTCAAGGATCAAAATCCAAGCTTGGAGTTCACCTTAGGGAGATCAACTTGGCAGAACAATGAACATGCCTAA 1287 0.4367 MPQNKIFGDQSSNQIPDLSLHISLPNSAPSSICTGGDSPFDTWPQQADDDDDAEGLKSHSDGSIKGCSPYHTDTQLSLANSTSAVTTTPSEVESTWRKRNFVRLSHHGVSEGQIRLINGIPLYSNLSSLDNSSTVPTIERSPTNKFSFSSIYAVSHPPYSANSAPNYSYNGAVGGVAGEPISRFHDITMESTPRPQQFQYFDYPQQQQHHQHHQHHQQFGNVTNFGASEFSNGFVRSRMLPRQQSNKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDEDFMSLTVPNNQNKNFLPNQRGAPNASMDHDMGYTSSNLWANSSTSRGARIQANSRDLDELSPQEILSSQHSGKPSEGNNCITRSFKDQNPSLEFTLGRSTWQNNEHA* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00292 428 MobiDBLite consensus disorder prediction 330 428 - -
Lapu4g00292 428 NCBIfam myb-like DNA-binding domain, SHAQKYF class 253 306 IPR006447 GO:0003677
Lapu4g00292 428 FunFam Myb family transcription factor 251 309 - -
Lapu4g00292 428 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 16 427 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lapu4g00292 428 SUPERFAMILY Homeodomain-like 250 307 IPR009057 -
Lapu4g00292 428 Gene3D - 252 309 - -
Lapu4g00292 428 MobiDBLite consensus disorder prediction 1 71 - -
Lapu4g00292 428 MobiDBLite consensus disorder prediction 350 428 - -
Lapu4g00292 428 MobiDBLite consensus disorder prediction 1 41 - -
Lapu4g00292 428 Pfam Myb-like DNA-binding domain 254 305 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00292 Lapu-Chr4 2955724 2964787 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00292 233 422 G2-like Transcription Factor Family AT5G16560 50.746 1.39e-47 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lapu4g00292 Myb_DNA-binding 1.3e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00292 - - gmx:100796973 599.742