Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00290 ATGAAGACTTTCTCCTCAATTCAACTACCCCACCATTTTTATTGTGCAAGATTCTTCTCTTACACAACCACCAGGACTCAACTTTCTTTTCCTGCAAAGGTCTTCAATTGCCAGGCAAAATCAGGCATAGATGGGTCATTGAATTTAAAAGTGGTGTCTCCCACTCTGTTAGTAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGACCTTGTTCTTGAAGAAACAAGGTTTGAGAAATGCGGTTGCTGCTAGAACCATCAACAAGTCAGATCTTTTTATTGATCACCTTGTCTCAAAGCTTCATTCTAAACACAAATCTTGGTATCTTGCAGGAAGAGAGCTTACAACTTTGGAGATCAGGGATGCTCTTATCCCTTATCTTGAATCTCTTTTTGAAGAGCATGGTGACATTCTAGTGGATGTGGTGGAAAACTATCCAAATCCTCCTGTTAAGGAGAAATCAGCAATGCCAGTTCCTCCTTCTAGTCCAGTGTTAGACTCTAAGAAGCTTAAAGCTGTGTCACTAGTGAGTGAGGCAGACCCAGATGGTGGCAATCTGCGCCCTCATGTTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTCGGAGTATCACACATCGATTCCCAGCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAAGAGAGCACATTCCTAGTATCCTCAGTAAAAGGCCTCAATTATGTGGTATCAGCCTATCTGAAAATCTTAAACCAACAATGAAGTTCTTAGAATCATTGGGTGTTGATGAGAAGCAATGGCCGAAGGTGATCAATCGCTTCCCGGCCCTGCTAACTTATAGCAGGCAGAAAGTGATGGAAAGCATAGATTTCCTCCATGAATTGGGTCTCTCTGAAGAAAATGTAGGTAAGATTTTAACTCGTTGCCCCAATATCGTTAGTTACAGTGTAGAGGACAATCTCCGACCCACAGCTAAGTATTTCCGTTCTTTGGGGGCTGATGTTGGCGTTCTTCTATTCAGATGCCCGCAGAATTTTGGTCTTAGCATTGAGGCCAACCTAAAACCTATAACAGCATTTTTCTTGGAGAGGGGATACACTTTGGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTCAGCTTGACCGAAAATTTGATTCCAAAATGGGATTTCTTTTTGACCACAGGATACCCAAAATCTGAGCTGGTCAAGTTCCCTCAGTATTTTGGATACAGTTTAGAGAAAAGGATTAAACCTAGATTTGCAATTATGGAGAAATCTGGAGTAAAGTTACTGCTGAACCAGGTTCTTTCACTGTCAAGCAACAACTTTGACAAGACCTTGAAAAAGAAAATGAAGAAAATGCAAGATGGTTAG 1416 0.4117 MKTFSSIQLPHHFYCARFFSYTTTRTQLSFPAKVFNCQAKSGIDGSLNLKVVSPTLLVAEKEEAKAVLTLFLKKQGLRNAVAARTINKSDLFIDHLVSKLHSKHKSWYLAGRELTTLEIRDALIPYLESLFEEHGDILVDVVENYPNPPVKEKSAMPVPPSSPVLDSKKLKAVSLVSEADPDGGNLRPHVVYLMELGMDIEQIRSITHRFPAFAYYSLEGKIKPVVEFFLELGVPREHIPSILSKRPQLCGISLSENLKPTMKFLESLGVDEKQWPKVINRFPALLTYSRQKVMESIDFLHELGLSEENVGKILTRCPNIVSYSVEDNLRPTAKYFRSLGADVGVLLFRCPQNFGLSIEANLKPITAFFLERGYTLEEIGTMISRYGALYTFSLTENLIPKWDFFLTTGYPKSELVKFPQYFGYSLEKRIKPRFAIMEKSGVKLLLNQVLSLSSNNFDKTLKKKMKKMQDG* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00290 471 PANTHER CGI-12 PROTEIN-RELATED 125 462 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 FunFam Transcription termination factor MTERF5 chloroplastic 247 467 - -
Lapu4g00290 471 Gene3D Transcription termination factor 3, mitochondrial 167 252 IPR038538 -
Lapu4g00290 471 Gene3D Transcription termination factor 3, mitochondrial 253 467 IPR038538 -
Lapu4g00290 471 SMART mt_12 412 443 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 SMART mt_12 276 306 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 SMART mt_12 311 342 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 SMART mt_12 167 199 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 SMART mt_12 380 411 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 SMART mt_12 344 375 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 Pfam mTERF 54 300 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 Pfam mTERF 185 364 IPR003690 GO:0003690|GO:0006355
Lapu4g00290 471 Pfam mTERF 290 457 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00290 Lapu-Chr4 2935394 2944140 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lapu4g00290 mTERF 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00290 K15032 - gmx:100781900 813.913