Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00285 ATGGTGTTGGGATGGAGAAGGAGGAAGGGAAACAGCAAGCAAAGCAAAGGTGGCAAACCCGTGATGGAGTTGGTGGTTCCCAACCACTTCAGGTGTCCAATTTCTCTTGACTTGATGAAGGATCCTGTGACATTGTCAACTGGGATCACCTATGATAGGGAGAATGTGGAGAGGTGGTTTGAAGAAGGGAACATCACATGTCCAGTTACCAACCAGGTTGTGAGGAACTTTGACATGATTCCAAACCATTCTCTCCGGATAATGATCCAAGACTGGTGTGTGGAGAATAGGCAACATGGGGTGGAGAGGATTCCAACACCAAGGATACCAATTAGCTCAATCGAGGTTGCTGAGCTTCTGATGCATGTGAAGAACTCAGCAAGGAGTTTGGACCAATATGGCTGCCTTGAATTGGTGCAGAAAATGAAGAAGTGGGGTGGGGAGAGTGAGAGGAACAAGAGGTGCATAGTGGACAATGGAGCGCCTGTGGCACTGGCTTCATCCTTTGATGCATTTGCCAATGACTCGGTGGAGAGAAATGTGGTGGTTCTTGAGGAGATTCTGTCAGCTCTCAATTGGATGTTTCCACTTCAATTGGAGGCACACAAGTCCTTGGGATCTTTGGCTTCTCTAAGTTGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAAGAGAAGTCCATTGTGGCATTGAAAGAGCTTCTTTCCTTTGGTGATGTGCAGCATGTGGAGGCCTTGTCACAAATTGAAGGGGTCAATGAGCTCTTGGTGGAGTTCATCAACAAGAGGGTTAGCCCAACCATCACAAAGGCCTCATTGAGGGTGGTTTGGTACTTGGTCTCATCCTCTTCCAATTCCAGTGAGAAAATGAAATTGGCATTTGTTGAATTGGGTTTGGTTTCTTCTTTGCTTGACATTCTCATTGACTCAGACAAGAGCCGCTATGAAAAGGCTTTGGCCATTTTGGACTCTCTATTCAGCTGTGAAGAAGGAAGGAACAAAGGTTGTGGGAATGATCTAACAATTCCTCTTTTGGTGAAGAAAATTCTGAGAGTTTCACCATTGACCACAGACTATTCTGTCTCTGCCCTTTTGAAGCTGTGCAAGTTTGGAGAAAAAGATGAAGGAAAAACCCTTCTTGAGGCCCTTCAAGTTGGTGCTTTTCAGAAGCTATTGTTGGTGTTGCAAGTTGGTTGTGGTGATGAGACTAAGGAGAAAGCAACTGAACTTCTCAAATTGATGAATCCTTACAGGGCTGAATTGGAATGCATAGACTCAGATTACAAGAATGTCAAGAGATCATTTTAA 1314 0.449 MVLGWRRRKGNSKQSKGGKPVMELVVPNHFRCPISLDLMKDPVTLSTGITYDRENVERWFEEGNITCPVTNQVVRNFDMIPNHSLRIMIQDWCVENRQHGVERIPTPRIPISSIEVAELLMHVKNSARSLDQYGCLELVQKMKKWGGESERNKRCIVDNGAPVALASSFDAFANDSVERNVVVLEEILSALNWMFPLQLEAHKSLGSLASLSCMVWFLKHQDLSGKEKSIVALKELLSFGDVQHVEALSQIEGVNELLVEFINKRVSPTITKASLRVVWYLVSSSSNSSEKMKLAFVELGLVSSLLDILIDSDKSRYEKALAILDSLFSCEEGRNKGCGNDLTIPLLVKKILRVSPLTTDYSVSALLKLCKFGEKDEGKTLLEALQVGAFQKLLLVLQVGCGDETKEKATELLKLMNPYRAELECIDSDYKNVKRSF* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00285 437 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Lapu4g00285 437 FunFam RING-type E3 ubiquitin transferase 26 97 - -
Lapu4g00285 437 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
Lapu4g00285 437 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Lapu4g00285 437 Gene3D - 118 416 IPR011989 -
Lapu4g00285 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 104 IPR013083 -
Lapu4g00285 437 SUPERFAMILY ARM repeat 149 414 IPR016024 -
Lapu4g00285 437 CDD RING-Ubox_PUB 27 79 IPR045210 -
Lapu4g00285 437 PANTHER WDSAM1 PROTEIN 22 417 IPR045185 GO:0061630
Lapu4g00285 437 SUPERFAMILY RING/U-box 21 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00285 Lapu-Chr4 2904792 2906105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00285 5 437 U-box Gene Family AT5G37490 43.311 9.48e-111 331
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00285 - - gmx:100794340 749.969