Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00281 ATGGCTCTCATTCGCCACCCTCGTTACCCTAACCTTCGACTTCCTCTCTTAGACCTCTCTGAGCGTCGCTCCATTTTCCCTCTCCCTTCCACCACCATCAAATCTTCCAATCACAACGCCATTAACATTGCTGACCTTGAGAAGCTCGCCATTCTTGGTCATGGTAACGGTGGCACTGTCTACAAAGTTTGCCATAAACACACCTCTGTCACCTATGCACTCAAGATTATCCGTGGCAATGTTCATCGTGCACTTTCAGAAATCTCAATCCTTCGTCGTGCCACTGACTGCCCCTATGTGGTTAGCTTCCTTGGCTCTTTCGAGAAGTCCAATGGCGAACTGGCGATACTCATGGAGTACATGGACAGTGGCAGCCTTCAAACCGCCATAGCCACCAATGGAACTTTCTCCGAAGAGAGACTTGTCTTGGTGGCGCATGACATCCTCAATGGTCTTGCGTATCTCCATGCACGCAACATCATTCATCGTGACATTAAGCCTGCAAACATCCTCGTAAGCAGCAAAGGTGAGGTGAAGATTGCTGATTTTGGAGTTAGCAAAGTGATGAGTCATACATTCGAGATGTGTAACTCTTACGTTGGCACAAACGCTTACATGAGTCCTGAACGGTTCGACCCAGATGCGTATGGAGGGAGCTATAATGGTTTTGCTGCTGATGTGTGGAGTTTTGGTTTGACCCTTTTTGAACTGTATGTTGGTCACTTACCATTTCTTGAAGCAGGTCAAAGGCTCAATTGGGCCACCCTTGTGTGTGCCATTTGCTTCAATGAGCCACCAAGCTTGCCGGAGACTGCATCAGTAGAGTTTCGCAATTTCATGGCGTGTTGCCTGAAGAAGGAGCCTAGTGAGAGGTGGACGACGACTCAACTCTTAACTCATCCATTTATATGCAAAAACCTAAAAAGGTGTTAA 933 0.4737 MALIRHPRYPNLRLPLLDLSERRSIFPLPSTTIKSSNHNAINIADLEKLAILGHGNGGTVYKVCHKHTSVTYALKIIRGNVHRALSEISILRRATDCPYVVSFLGSFEKSNGELAILMEYMDSGSLQTAIATNGTFSEERLVLVAHDILNGLAYLHARNIIHRDIKPANILVSSKGEVKIADFGVSKVMSHTFEMCNSYVGTNAYMSPERFDPDAYGGSYNGFAADVWSFGLTLFELYVGHLPFLEAGQRLNWATLVCAICFNEPPSLPETASVEFRNFMACCLKKEPSERWTTTQLLTHPFICKNLKRC* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00281 310 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Lapu4g00281 310 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Lapu4g00281 310 FunFam Mitogen-activated protein kinase 2 123 310 - -
Lapu4g00281 310 SMART serkin_6 46 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00281 310 PRINTS Tyrosine kinase catalytic domain signature 272 294 IPR001245 GO:0004672|GO:0006468
Lapu4g00281 310 PRINTS Tyrosine kinase catalytic domain signature 225 247 IPR001245 GO:0004672|GO:0006468
Lapu4g00281 310 PRINTS Tyrosine kinase catalytic domain signature 154 172 IPR001245 GO:0004672|GO:0006468
Lapu4g00281 310 PRINTS Tyrosine kinase catalytic domain signature 118 131 IPR001245 GO:0004672|GO:0006468
Lapu4g00281 310 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 37 305 - -
Lapu4g00281 310 Pfam Protein kinase domain 47 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00281 310 SUPERFAMILY Protein kinase-like (PK-like) 37 307 IPR011009 -
Lapu4g00281 310 ProSiteProfiles Protein kinase domain profile. 46 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00281 310 CDD PKc_MAPKK_plant_like 44 303 - -
Lapu4g00281 310 Gene3D Transferase(Phosphotransferase) domain 1 124 309 - -
Lapu4g00281 310 Gene3D Phosphorylase Kinase; domain 1 21 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00281 Lapu-Chr4 2876528 2877460 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00281 1 307 MAP Kinase Kinase Gene Family AT1G18350 52.716 2.52e-109 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Lapu4g00281 Pkinase 5.8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00281 K20604 - gmx:100778369 462.225