Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00271 ATGCCATTGATTCGCACTTCTCCACCGCTTCACTGTGCTATTTCCACACTTACCAATGCACCACCTTCATCATCTTCCACTCTCTCTGCTGCCACATTCGGTTCCCACCTTCTGCGCAAAATTCAGAACCCAATTTCTGGGTTTTCCGCAACCAGGAATCGATCGCGTGCTGCGCTGATCAGAGCCAAAGCAGGGGCCGATTACTATTCCACCTTGAACGTTAGCCCCAGTGCCTCGCTGCAAGAAATCAAGGCCTCCTATCGCAAGCTGGCGCGCAAGTACCATCCAGATATGAATAAAAGTCCTGGGGCTGAGGAGAAGTTCAAAGAAATAAGTGCTGCATATGAGGTCCTATCAGATGATGAGAAAAGATCTTTATACGATCGTTTTGGTGAGTCAGGTCTACAAGAAGAAAATGGAGGGTCAACTGGTGCTCCAGGGGTTGATCCTTTTGATTTATTTGATACATTCTTTGGTCGTTCTGATGGTATATTTGGAGATAGTGATGAAGGGGGCATCAACTTCAATTTTGGAAACAAGAGAAACCGTGTTCATGATATTCGATATGACCTTAATTTGAGCTTCGAAGAATCAATATTTGGAGCCCAGAGGGAGATTGAAGTTTCCTGTTTTCAGACATGTAACACATGTGATGGTACAGGAGCTAAATCAAAGAATTGCATTAAACAATGCACAAATTGTGGTGGCAGAGGGGGAGAAATGAAAAGTCAGAGAACACCCTTTGGAATGATGTCTCAGGTTTCTACCTGCTCTAAGTGCAGTGGCCAAGGTAAAATAATCACAGATCACTGTCGAAGATGTGATGGCAGTGGTCAGGTGCAATCTAAACAAATAGTGGAAGTGGATATTCCTGCTGGGGTCAATGATGGAGACACAATGCAAATTCAAGGACAAGGGAATTTTGATAAAAAGAGGCAAATTACTGGGGATCTTTTTGTTGTCCTGCATGTTGATGAAAAACAAGGAATTTGGAGAGAGGGTCTTCATTTGTACTCAAAGATTAACATTGACTTCACAGATGCAATATTGGGGTCAGTTAAAAAGGTAGAAACTGTTGAAGGTTTACGGGATCTTCATATTCCTTCAGGGATTCAACCTGGAGATTCAGTGAAGTTGTCTCGTTTGGGAGTTCCAGATATGAATAAACCATTTGTTCGAGGCAATCATTACTTCATCGTGAATGTTCTTATTCCAAAGGATATCAGAGGCACGGAACGTGTACTGGTTGAGCAGTTAGCTTCACTAAGAGCTTCTAACAAAAGGGATTCACTGTTTTCTGGTGACGATGGAATACCTAAAGGAAAGTTCAATGAATTCGTAAAGAGGAGGGATCCAAGGGGTGATGGTTCAAGCAAGGGAATTAAAAATGTTGACTCTCTATGGGGATCAATCAAGAACTTCTTAAGTGGAGGACAGTCCGATGAAAGGTTTGCTTCAATTAGCTTGGATACATCAGCATTAATACGGAGATATGATGACCAAAATCCTTCTGTCCTTGATTCCTTTTTTGTTGTTTTCGTTATAACTTGGATTTTTGCCGTGATAGTAAAGTCTAAGTACTCGATGCTTCAGAAAAGATCCGAGTCCTTTAATAGAACAAGGTGA 1626 0.4194 MPLIRTSPPLHCAISTLTNAPPSSSSTLSAATFGSHLLRKIQNPISGFSATRNRSRAALIRAKAGADYYSTLNVSPSASLQEIKASYRKLARKYHPDMNKSPGAEEKFKEISAAYEVLSDDEKRSLYDRFGESGLQEENGGSTGAPGVDPFDLFDTFFGRSDGIFGDSDEGGINFNFGNKRNRVHDIRYDLNLSFEESIFGAQREIEVSCFQTCNTCDGTGAKSKNCIKQCTNCGGRGGEMKSQRTPFGMMSQVSTCSKCSGQGKIITDHCRRCDGSGQVQSKQIVEVDIPAGVNDGDTMQIQGQGNFDKKRQITGDLFVVLHVDEKQGIWREGLHLYSKINIDFTDAILGSVKKVETVEGLRDLHIPSGIQPGDSVKLSRLGVPDMNKPFVRGNHYFIVNVLIPKDIRGTERVLVEQLASLRASNKRDSLFSGDDGIPKGKFNEFVKRRDPRGDGSSKGIKNVDSLWGSIKNFLSGGQSDERFASISLDTSALIRRYDDQNPSVLDSFFVVFVITWIFAVIVKSKYSMLQKRSESFNRTR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00271 541 ProSiteProfiles Zinc finger CR-type profile. 201 283 IPR001305 GO:0031072|GO:0051082
Lapu4g00271 541 Pfam DnaJ domain 67 128 IPR001623 -
Lapu4g00271 541 Gene3D - 214 278 - -
Lapu4g00271 541 Gene3D - 331 422 - -
Lapu4g00271 541 FunFam Chaperone protein dnaJ A6 chloroplastic 64 170 - -
Lapu4g00271 541 Gene3D - 185 320 - -
Lapu4g00271 541 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 31 426 - -
Lapu4g00271 541 FunFam Molecular chaperone DnaJ 206 283 - -
Lapu4g00271 541 ProSitePatterns Nt-dnaJ domain signature. 108 127 IPR018253 -
Lapu4g00271 541 SUPERFAMILY Chaperone J-domain 66 166 IPR036869 -
Lapu4g00271 541 SMART dnaj_3 66 123 IPR001623 -
Lapu4g00271 541 CDD DnaJ 67 120 IPR001623 -
Lapu4g00271 541 Hamap Chaperone protein DnaJ [dnaJ]. 64 464 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Lapu4g00271 541 PRINTS DnaJ domain signature 123 142 IPR001623 -
Lapu4g00271 541 PRINTS DnaJ domain signature 103 123 IPR001623 -
Lapu4g00271 541 PRINTS DnaJ domain signature 69 87 IPR001623 -
Lapu4g00271 541 PRINTS DnaJ domain signature 87 102 IPR001623 -
Lapu4g00271 541 Pfam DnaJ central domain 214 278 IPR001305 GO:0031072|GO:0051082
Lapu4g00271 541 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 201 281 IPR036410 -
Lapu4g00271 541 Pfam DnaJ C terminal domain 187 405 IPR002939 -
Lapu4g00271 541 Gene3D DnaJ domain 64 167 IPR036869 -
Lapu4g00271 541 SUPERFAMILY HSP40/DnaJ peptide-binding domain 186 324 IPR008971 GO:0006457|GO:0051082
Lapu4g00271 541 SUPERFAMILY HSP40/DnaJ peptide-binding domain 332 411 IPR008971 GO:0006457|GO:0051082
Lapu4g00271 541 CDD DnaJ_zf 214 278 IPR001305 GO:0031072|GO:0051082
Lapu4g00271 541 CDD DnaJ_C 186 408 - -
Lapu4g00271 541 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00271 Lapu-Chr4 2757956 2765157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00271 68 128 C2H2 Transcription Factor Family AT1G74250 43.284 1.15e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00271 K03686 - gmx:100782135 899.812