Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00270 ATGAAATCTCAAACCAAAAACACAAAAGCAACAATGCAACATTCTCACACACTCTTTCCCACCATTCTCTTTCTCTTTTTCTTCTTCCCTTCAACACTCTCCGACCTCTCGTCGGAGCGCGCGGCGCTCCTCGCCCTGCGCTCCGCCGTGCGCGGCCGCACGCTCCTCTGGAACACTACCTTCACCTCGCCCTGCGCCTGGCCCGGCGTCCAATGCGACGCCGCAAACGCCACCGTGGTGGAGCTCCACCTCCCCGCCGTCGCTCTCTCCGGCGAGCTTCCCGCCGGTGTGTTCCCGGAGCTTCCCAAACTCCACACCCTCAGCCTCCGCGTCAACTCCCTCTCCGGCGCCCTCCCCTCCGACCTCGCTTCCTGCTCCGCTCTCCGCAACCTATTCCTCCAACAGAACCACTTCTCCGGCGAGGTGCCGGCGTTTATCTCCGGCATGACCGGCCTCGTCCGGCTCAATTTGGCCTCCAACAACTTTTCCGGCCAAATTCCGGCCCGGTTTGGGAACCTCACCCGATTGAGGACCCTTTTCCTCGAGAATAATCGGCTCACTGGTTCGTTACCCGGTTTGGAAGAACTCGGTGAATTGGCTCAGTTTAATGTCTCTTACAACATGTTAAACGGTTCTGTTCCTAAAAAGTTGCAGACTTTTGATAAAGATTCGTTTTTGGGCAATACCCTTTGTGGGAAGCCACTTGGGATTTGTCCTTGGGATGATGCGGGTGGTGAGAGTGGTATAAATGGGAGTTCAAATTCAAGTGGGGTTGGAGGGGGTGGAGGAAGTGTGATTGGAGGGGAAAAGAAGAAGGGGAAGCTTTCTGGGGGTGCAATTGCTGGGATTGTTGTTGGGTGTGTGGTGGCTCTTTTGTTGGTTGTGTTTGCCTTGATTCTTTTGTGTAGAAGTGGGAACAAGACTAGGAGTGTTGATAATGTAAGTAACATGGTGGGGTTGAAGGAGGAGCCTCAACGGCATGGGGAGGTGGGAATTGAGGGTGGTAATGTGGAGAGTGGTGGTGGGGGTGGGAATTCGGTGGCGGTGGCGGCAGTGAGTGGGAATGGAGTTGGCGGTGGAAGTGGTGGAGATAAGAAGTTGGTGTTTTATGGTAATAAGGTGAAGGTGTTTGATTTGGAGGATTTACTAAGGGCTTCTGCTGAGGTGTTGGGAAAAGGAACTTTTGGGACTACCTATAAGGCTGTTTTAGAGGATGGGCCTGTGGTGGCTGTGAAGAGGTTGAGGGATGTGACGGTTTCGGAGAAGGAGTTTAAGGAGAAGATTGATGTGGTGGGAGTGATGGATCATGAGAATTTGGTGCCTCTCAGGGCTTACTATTATAGCAGGGATGAGAAACTTCTTGTTCATGATTACATGCCAATGGGAAGCCTATCTGCAATTTTGCATGGAAACAAAGGAGCTGGTAGGACACCGTTGAATTGGGAAATGAGATCAGACATTGCAATGGGAGCTGCTCGTGGCATCGAGTACTTACATTCACGAGGGCCTAGTGTTTCTCATGGAAACATAAAGTCCTCCAACATTCTTCTAACCAAATCCTATGATGCCAGGGTGTCTGATTTTGGCCTTGCACACCTTGTTGGCCCCTCATCCACACCCAACAGGGTGGCCGGCTACCGTGCCCCGGAAGTAACCGATCCACGCAAAGTTTCTCAGAAGGCTGATGTATACAGCTTTGGTGTGTTGCTCTTGGAACTTCTGACTGGAAAGGCTCCTACACATGCCCTCTTGAATGAGGAAGGAGTGGACCTTCCAAGATGGGTCCAATCAGTGGTTAGAGAAGAGTGGAGTTCTGAGGTGTTTGATATTGAACTCCTTAGGTATCAGAATTCTGAAGAGGAGATGGTTCAGTTGTTGCAGCTTGCAGTGGATTGTGTGGTTCCATACCCTGATAACCGCCCTTCAATGTCTCAAGTGAGACAACGCATAGAAGAGTTACGTAGGTCTAGCATGAAAGAGGGTACTCAAGACCAAATCCAACAACCTGATTTGATCGATGATATAGATGATGTATCCTCTAGATGA 2046 0.5098 MKSQTKNTKATMQHSHTLFPTILFLFFFFPSTLSDLSSERAALLALRSAVRGRTLLWNTTFTSPCAWPGVQCDAANATVVELHLPAVALSGELPAGVFPELPKLHTLSLRVNSLSGALPSDLASCSALRNLFLQQNHFSGEVPAFISGMTGLVRLNLASNNFSGQIPARFGNLTRLRTLFLENNRLTGSLPGLEELGELAQFNVSYNMLNGSVPKKLQTFDKDSFLGNTLCGKPLGICPWDDAGGESGINGSSNSSGVGGGGGSVIGGEKKKGKLSGGAIAGIVVGCVVALLLVVFALILLCRSGNKTRSVDNVSNMVGLKEEPQRHGEVGIEGGNVESGGGGGNSVAVAAVSGNGVGGGSGGDKKLVFYGNKVKVFDLEDLLRASAEVLGKGTFGTTYKAVLEDGPVVAVKRLRDVTVSEKEFKEKIDVVGVMDHENLVPLRAYYYSRDEKLLVHDYMPMGSLSAILHGNKGAGRTPLNWEMRSDIAMGAARGIEYLHSRGPSVSHGNIKSSNILLTKSYDARVSDFGLAHLVGPSSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTHALLNEEGVDLPRWVQSVVREEWSSEVFDIELLRYQNSEEEMVQLLQLAVDCVVPYPDNRPSMSQVRQRIEELRRSSMKEGTQDQIQQPDLIDDIDDVSSR* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00270 681 FunFam Probable inactive receptor kinase At1g48480 459 661 - -
Lapu4g00270 681 FunFam pollen receptor-like kinase 1 355 458 - -
Lapu4g00270 681 ProSiteProfiles Protein kinase domain profile. 384 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00270 681 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Lapu4g00270 681 Gene3D Ribonuclease Inhibitor 35 232 IPR032675 -
Lapu4g00270 681 Pfam Protein kinase domain 387 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00270 681 Gene3D Transferase(Phosphotransferase) domain 1 459 678 - -
Lapu4g00270 681 CDD STKc_IRAK 390 653 - -
Lapu4g00270 681 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Lapu4g00270 681 PANTHER OS05G0588300 PROTEIN 21 657 - -
Lapu4g00270 681 ProSiteProfiles Leucine-rich repeat profile. 175 197 IPR001611 GO:0005515
Lapu4g00270 681 FunFam Probable inactive receptor kinase RLK902 36 193 - -
Lapu4g00270 681 MobiDBLite consensus disorder prediction 653 681 - -
Lapu4g00270 681 Gene3D Phosphorylase Kinase; domain 1 363 458 - -
Lapu4g00270 681 SUPERFAMILY L domain-like 52 219 - -
Lapu4g00270 681 SUPERFAMILY Protein kinase-like (PK-like) 388 650 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00270 Lapu-Chr4 2749586 2752787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00270 35 670 Receptor kinase-like Gene Family AT1G48480 59.845 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Lapu4g00270 Pkinase 3.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00270 - - vum:124840126 1028.47