Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00268 ATGGAGAGGGAATTTTTTGGCTTGAGTTCCAAAAATGGTGCATGGACTACTATGAAAGATGATACTGCTAACAAACCAAAAGACCCAGTGAGGAGTTCAGGAATGCAGTGGTCATTCCCAAACAAGGTATCAGTCCTTCCTCAGTTCCTGTCCTTCAAGACCAATCAGGAAGACAGGCCGAGAAAGACTATTCTTGATCCACTAGCTTTATCTGGATATATGAACATGCCAGCTAAAGAGGCTTTTGAGTCTAACCAGAAACCATTTTTTGGTGTGGCTCAGAGAAATTTGTCCATAGGAAAGCATGGTGCCGGAACCAAACAGGGAATGACAGTTTATCCCATGCAATGTTGTGATGCACAATCTTCATGCCTTCAGGAAGCAAGAATATTTTCAGTTTCCAACCAATCAAATCAAGGGAGTCCTGTTCTTCAATCTAATCTTGCTACAACCGGATTGAACATGGTCAATTCAGTCATAAAACCACAACCTCTTGGTTCCAAATCCTCTGGCACACCTCTATCTGTTCTTCCATCAATAGGTTCCATTGTTGGATCCACTGACTTAAGGAACAGTTCGAAATCCTCTGGCATGGCTACTCAGCTCACCATTTTCTATGCTGGTTCCGTATGTGTTTATAATGACATAACCCCCGAGAAGGCCAAGGCTATCATGTTAATGGCTGGAAATGGGTCTACTCCAACTCAGAAAATGGCAGTTTCCACAGCTAAATTGCAGACACCAGTTTCTATTCCCTCCAAAGATGATGGTTTCATTGTGAGCCAATCCTATCCTTCCTCACCCCTCCCAAGGCCTCTCCCATTGACCTCTCATGTCAATTCTCAGCCAGGAGGAGGATCTTCCAGCAGCAATACACTTGCAATAATAAGACCAATAGTAGGACCTTCAACTGCCCCTACTAACCATTTGGACTCACCTATTATTGTTGGTTCTGTAGGATCTGCATCTAACGAAAAGGCTCAACCAGGTACACTATGCCTAGTGTTTCCAGTATACTTGCCTCAGGCACGTAAAGCATCCTTGGCTCGGTTTTTGGAGAAGAGAAAGGAAAGGATGATGAGCACATCACCATACTTTTACATGAGCAGGAAATCACCTGAATGCAGCTCATCTGGATCAGACAGTGTTACTTTCTCCTTTAACTTCTCTGGATCCTGTTCTCTACCAGCCACCAACTAG 1200 0.4383 MEREFFGLSSKNGAWTTMKDDTANKPKDPVRSSGMQWSFPNKVSVLPQFLSFKTNQEDRPRKTILDPLALSGYMNMPAKEAFESNQKPFFGVAQRNLSIGKHGAGTKQGMTVYPMQCCDAQSSCLQEARIFSVSNQSNQGSPVLQSNLATTGLNMVNSVIKPQPLGSKSSGTPLSVLPSIGSIVGSTDLRNSSKSSGMATQLTIFYAGSVCVYNDITPEKAKAIMLMAGNGSTPTQKMAVSTAKLQTPVSIPSKDDGFIVSQSYPSSPLPRPLPLTSHVNSQPGGGSSSSNTLAIIRPIVGPSTAPTNHLDSPIIVGSVGSASNEKAQPGTLCLVFPVYLPQARKASLARFLEKRKERMMSTSPYFYMSRKSPECSSSGSDSVTFSFNFSGSCSLPATN* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00268 399 Pfam Jas motif 341 365 IPR018467 -
Lapu4g00268 399 ProSiteProfiles Tify domain profile. 195 230 IPR010399 -
Lapu4g00268 399 MobiDBLite consensus disorder prediction 1 36 - -
Lapu4g00268 399 Pfam tify domain 199 229 IPR010399 -
Lapu4g00268 399 MobiDBLite consensus disorder prediction 273 290 - -
Lapu4g00268 399 MobiDBLite consensus disorder prediction 266 290 - -
Lapu4g00268 399 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 138 377 IPR040390 -
Lapu4g00268 399 SMART tify_2 195 230 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00268 Lapu-Chr4 2712177 2718338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00268 35 383 Tify Gene Family AT3G17860 36.712 8.32e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lapu4g00268 tify 3.7e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00268 K13464 - gmx:100807288 600.127