Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00256 ATGGAGGAAATTGATTCCACACCAAAGTCTCTTATGGAAAACCTGCTTGGCCTTTTGAGGGTTCGCGTGAAGCGTGGTGTCAACCTTGCTGTTCGTGATGTCCGAAGCAGCGACCCTTATGTTGTCATCAAGATGTTCAATCAGAAACTAAAGACTCGTTTCATAAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACGCTTTCTATTATAGATCCGAATCACCAAGTTAATCTGACTGTGTATGACCATGACACCTTTAGCAAAGATGACAGAATGGGGGATGCAGAATTTGACATCTTTCCCTTTATAGAAGCCTTGAAGAGCAACTTAACTGGCCTTCCAAATGGTACTGTAATCAAAAGAATACAACCAAGTGCCCAGAACTTCCTTGCCGATGAGAGCTGCATCACTTATATCAATGGCAAGGTTGTCCAAGATATGATTCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATTCAATTGCAATGGATTGATCTTCCTGGTTCTAAGGGTATA 528 0.4129 MEEIDSTPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVIKMFNQKLKTRFIKKDVNPEWNEDLTLSIIDPNHQVNLTVYDHDTFSKDDRMGDAEFDIFPFIEALKSNLTGLPNGTVIKRIQPSAQNFLADESCITYINGKVVQDMILRLQNVECGEVEIQLQWIDLPGSKGI 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00256 176 ProSiteProfiles C2 domain profile. 1 117 IPR000008 -
Lapu4g00256 176 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 14 174 IPR044562 -
Lapu4g00256 176 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 102 IPR035892 -
Lapu4g00256 176 CDD C2_ArfGAP 16 159 - -
Lapu4g00256 176 Gene3D C2 domain 13 174 IPR035892 -
Lapu4g00256 176 Pfam C2 domain 17 101 IPR000008 -
Lapu4g00256 176 SMART C2_3c 18 113 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00256 Lapu-Chr4 2567688 2570051 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00256 49 176 C2H2 Transcription Factor Family AT1G70790 59.231 1.40e-50 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00256 - - gmx:100810504 317.39