Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00254 ATGGAGCCATCCTCGATCTCCCCACCGCCAGCTCCGCCCGCCACCGCCGTCCCCTTCCCCGCCGACCCCAACGACCACCTCCCGCCGCCCATTGCCGAACCGCCGTCAAATCACCCACCCTACGCCGAGATGATATACACGGCAATCGAGGCGCTGAAGGAGAAGGACGGTTCGAGCAAGAAGGCGATAGGGAAGTACATGGAGCAAGTCTACAAGGACCAGCTTCCTCCGAATCACTCCACCTTGTTGACTCAGCACTTGACTCGGATGAAGAGCAGTGGAATGCTCGTCATGGTGAAGAAGTCCTACGCGCTTCCTAGATCTGCTGCTGCTCTTGCCGAGGGCGCTGTGCCCGAGCCCTCTCCTTCAACCATTCCCAGGCCCAGAGGCCGCCCTCGCAAGGCTCAAACCCCTGTCCACAACCTGCCTCAGCCTCTGGCGCAGGCCCAGGACGCTCTAATCCCATCGGCTCAGCAGAATGCTGAGCCTGTCTGGGCTGCGCTTGGCCTTGCCGACGAGCCTCTGCAAGCTGAGAGCAGCAAGAAGCGTCCGGGTCGTCCGAAGAAATATGCCACCGGCACCCCTGGAACGGGCCGGAGAGGCCGTCCTGTTGGCTCTGGAAAAGGCCCGGGTCGTCCTCCTAAGCCCAAGCCCGTTGCTTCAGATACTTCTGCCTCTGTCGGGCCGAAGAGACGCCCGGGCCGCCCGCCTAAGAACCAGACTCAAGCAACTCAAATTCCTTTTGCTCCATCTACACCTACTGCTGCTGCTGCTGCTGTGCCGGACTCGGAGCCCTTGGCAGAACCGGTTCCTGCTGGTGATGGAATTATACTCGGGCCTAGAGTTCGGGGTCGACCGAAGAAGTTTGCTGACGAGATTATTCCCTCCGGCAGAGGCAGAGGAAGGGGTCGAGAATATGAGGAGTCCACTTCTGCTGGAGCTCCACAAAATGCTGTCAATGAAGAGCTCAAGAGGAAGCTTGAACACTTTGTGAGTTGTGTAAAGAAAATAAGACTGAACAAATGTTTTATTTACTAA 1038 0.5809 MEPSSISPPPAPPATAVPFPADPNDHLPPPIAEPPSNHPPYAEMIYTAIEALKEKDGSSKKAIGKYMEQVYKDQLPPNHSTLLTQHLTRMKSSGMLVMVKKSYALPRSAAALAEGAVPEPSPSTIPRPRGRPRKAQTPVHNLPQPLAQAQDALIPSAQQNAEPVWAALGLADEPLQAESSKKRPGRPKKYATGTPGTGRRGRPVGSGKGPGRPPKPKPVASDTSASVGPKRRPGRPPKNQTQATQIPFAPSTPTAAAAAVPDSEPLAEPVPAGDGIILGPRVRGRPKKFADEIIPSGRGRGRGREYEESTSAGAPQNAVNEELKRKLEHFVSCVKKIRLNKCFIY* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00254 345 MobiDBLite consensus disorder prediction 1 37 - -
Lapu4g00254 345 MobiDBLite consensus disorder prediction 111 158 - -
Lapu4g00254 345 Gene3D - 34 115 IPR036388 -
Lapu4g00254 345 SMART AT_hook_2 181 193 IPR017956 GO:0003677
Lapu4g00254 345 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Lapu4g00254 345 SMART AT_hook_2 297 309 IPR017956 GO:0003677
Lapu4g00254 345 SMART AT_hook_2 230 242 IPR017956 GO:0003677
Lapu4g00254 345 SMART AT_hook_2 280 292 IPR017956 GO:0003677
Lapu4g00254 345 Pfam linker histone H1 and H5 family 38 100 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu4g00254 345 MobiDBLite consensus disorder prediction 284 307 - -
Lapu4g00254 345 MobiDBLite consensus disorder prediction 237 251 - -
Lapu4g00254 345 SUPERFAMILY "Winged helix" DNA-binding domain 34 109 IPR036390 -
Lapu4g00254 345 CDD H15 35 104 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu4g00254 345 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 37 107 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu4g00254 345 PRINTS Histone H5 signature 51 68 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu4g00254 345 PRINTS Histone H5 signature 24 45 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu4g00254 345 PRINTS Histone H5 signature 177 196 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu4g00254 345 PRINTS Histone H5 signature 121 135 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lapu4g00254 345 PANTHER HISTONE H1 18 240 - -
Lapu4g00254 345 SMART h15plus2 35 102 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lapu4g00254 345 MobiDBLite consensus disorder prediction 175 317 - -
Lapu4g00254 345 PRINTS AT-hook-like domain signature 126 136 IPR017956 GO:0003677
Lapu4g00254 345 PRINTS AT-hook-like domain signature 228 239 IPR017956 GO:0003677
Lapu4g00254 345 PRINTS AT-hook-like domain signature 278 288 IPR017956 GO:0003677
Lapu4g00254 345 FunFam Histone H1.2 34 114 - -
Lapu4g00254 345 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00254 Lapu-Chr4 2536616 2541412 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00254 44 109 Single Myb Histone (SMH) Gene Family AT1G49950 40.909 1.99e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00254 - - vun:114182142 474.167