Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00253 ATGGAGGAAATTGATTCCACACCAAAGTCTCTTATGGAAAACCTGCTTGGCCTTTTGAGGGTTCGCGTGAAGCGTGGTGTCAACCTTGCTGTTCGTGATGTCCGAAGCAGCGACCCTTATGTTGTCATCAAGATGTTCAATCAGAAACTAAAGACTCGTTTCATAAAAAAGGATGTGAATCCTGAGTGGAATGAAGACCTTACGCTTTCTATTATAGATCCGAATCACCAAGTTAATCTGACTGTGCATGACCATGACACCTTTAGCAAAGATGACAGAATGGGAGATGCAGAATTTGACATCTTTCCCTTTATAGAAGCCTTGAAGAGCAACTTAACTGGCCTTCCAAATGGTACTGTAATCAAAAGAATACAACCAAGTGCCCAGAACTTCCTTGCCGATGAGAGCTGCATCACTTATATCAATGGCAAGGTTGTCCAAGATATGATTCTTAGATTGCAAAATGTGGAATGTGGTGAAGTGGAAATTCAATTGCAGTGGATTGATCTTCCTGGTTCTAAGGGTATATGA 531 0.4143 MEEIDSTPKSLMENLLGLLRVRVKRGVNLAVRDVRSSDPYVVIKMFNQKLKTRFIKKDVNPEWNEDLTLSIIDPNHQVNLTVHDHDTFSKDDRMGDAEFDIFPFIEALKSNLTGLPNGTVIKRIQPSAQNFLADESCITYINGKVVQDMILRLQNVECGEVEIQLQWIDLPGSKGI* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00253 176 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 14 174 IPR044562 -
Lapu4g00253 176 Gene3D C2 domain 13 174 IPR035892 -
Lapu4g00253 176 Pfam C2 domain 17 101 IPR000008 -
Lapu4g00253 176 CDD C2_ArfGAP 16 159 - -
Lapu4g00253 176 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 13 102 IPR035892 -
Lapu4g00253 176 SMART C2_3c 18 113 IPR000008 -
Lapu4g00253 176 ProSiteProfiles C2 domain profile. 1 117 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00253 Lapu-Chr4 2533033 2535579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00253 49 176 C2H2 Transcription Factor Family AT1G70790 59.231 7.27e-50 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00253 - - gmx:100810504 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g02537 3 47513087 47517820 Lapu4g00253 4 2533033 2535579 ECH
Lapu4g00253 4 2533033 2535579 Lapu4g00253 4 2533033 2535579 ECH
Lapu3g03953 3 62966270 62966980 Lapu4g00253 4 2533033 2535579 PCT