Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu4g00249 | ATGATATACACGGCAATCGAGGCGCTGAAGGAGAAGGACGGTTCGAGCAAGAAGGCGATAGGGAAGTACATGGAGCAAGTCTACAAGGACCAGCTTCCTCCGAATCACTCCACCTTGTTGACTCAGCACTTGACTCGGATGAAGAGCAGTGGAATGCTCGTCATGGTGAAGAAGTCCTACGCGCTTCCTAGATCTGCTGCTGCTCTTGCCGAGGGCGCTGTGCCCGAGCCCTCTCCTTCAACCATTCCCAGGCCCAGAGGCCGCCCTCGCAAGGCTCAAACCCCTGTCCACAACCTGCCTCAGCCTCTGGCGCAGGCCCAGGACGCTCTAATCCCATCGGCTCAGCAGAATGCTGAGCCTGTCTGA | 366 | 0.5765 | MIYTAIEALKEKDGSSKKAIGKYMEQVYKDQLPPNHSTLLTQHLTRMKSSGMLVMVKKSYALPRSAAALAEGAVPEPSPSTIPRPRGRPRKAQTPVHNLPQPLAQAQDALIPSAQQNAEPV* | 122 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu4g00249 | 121 | Gene3D | - | 1 | 72 | IPR036388 | - | |
| Lapu4g00249 | 121 | Pfam | linker histone H1 and H5 family | 1 | 57 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Lapu4g00249 | 121 | ProSiteProfiles | Linker histone H1/H5 globular (H15) domain profile. | 1 | 64 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 | |
| Lapu4g00249 | 121 | PANTHER | HISTONE H1 | 1 | 113 | - | - | |
| Lapu4g00249 | 121 | FunFam | Histone H1.2 | 1 | 71 | - | - | |
| Lapu4g00249 | 121 | SUPERFAMILY | "Winged helix" DNA-binding domain | 1 | 66 | IPR036390 | - | |
| Lapu4g00249 | 121 | MobiDBLite | consensus disorder prediction | 68 | 121 | - | - | |
| Lapu4g00249 | 121 | SMART | h15plus2 | 1 | 59 | IPR005818 | GO:0000786|GO:0003677|GO:0006334 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lapu4g00249 | Lapu-Chr4 | 2480482 | 2486011 | Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu4g00249 | 1 | 66 | Single Myb Histone (SMH) Gene Family | AT1G49950 | 40.909 | 3.43e-08 | 48.5 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lapu4g00249 | - | - | vun:114182142 | 218.009 |