Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00239 ATGACTCCTCGCGTTGAAGATTTCGAAAACGACAATCTCTCCTCCACCGACGATGATGATGACGACGGCTTCAAGGAGGATATGGCCGCGCTCTCCCGAGCCTGCATGATCGTTGTCCCTGGCGCCGATAATAACTCAGCAGCTGAAGATGATGTTCCGTCGGCGGTGGACCCTCTCATTGACGCCGGCACTGCCATCGTTCCCGTCGCCACCGACACGGACTCTGACGACCAGGACGACCTCGAATGTCTCAAGAGAGTGCAGAGTCTTTACCAGCCTCTGTCCGTTCTTCCGCCGCTTGCGCCGGCGGAGGCCGTGTCTGACGACGGCGATGACGTGGATGATCTTGAGACCGTGCGCGCCATCATGAAAAGGTTTGGCAACTACAACGAAGGTTTGCATGAAGGTGGAATGAGAATGTTGATTGAAGAGGATCAGATCTCCAGCCTGGGCTGTGAGGGTGATATTGCTAATGGCTCAATCCATTACGAATCAGATGGAGGTGAATTGTGTCCTTTTTCTCAAGATCCTGATGAGGCTGCCACAGAGGAGTTGATTGAAAACATTGAAATGCAGCTTAGTGATTTTGTTGAGAGTTCTGAACCTGATGCCTGGGAGTCATCCAGATTACCACAGAAAAGATTGAGCTGTCCTCCTGTTGTTCAGTGTTTTATTGATGCCATTAAGAAAAATAGAGATTTGCAGAGATTTCTTAGAGGTAAGTTGATTGAGCTCGAGGCTAAAATTGAGGAAAACAAAAAGATAAGGAATAGAATTAAAATTCTTAAGGACTTCCAGGCCTCATGCACTAGAAGAACAGGGAATGTGTTATCACTGAAAAAGGATCCACGTGTTCAATTAATATCTGCAAAAAGGTCTTCTGCTCCAAAGAAGGCATGTAAACGTAAGAGGGTACCTGCAATTTATTATGGCCCAGAAGAGAATTCTCGTGTCGCTAACTATAGGATGGTATTGGATAGATTTCCACTTTCATTGGATCGGAAAAAGTGGTCTAAGGTAGACAGGGGAAATCTTTTTAAGGGAATTAAGCAACAATTCCAAGAAATGGTGCTTCAACTTTCGCTTTCACTTGATAGAACAAGTTCAGAGGGCTTGCTTGGAGATGCTGATGACATGGATAATATAATTGCATCTGTTAAAGATCTTGAAGTCACACCAGAGAGGATTAGAAATTTTTTGCCTAAAGTTAATTGGGATCTGCTAGCTTCTATGTATGTTGGTGGCCATACTGGTGCTGAATGTGAATCGAGGTGGTTGAATTATGAAGATCCTTTGATCAACCAAGGTGCATGGACTAAGGAGGAGGACAGGTCCCTTTTACTTATTGTCCAAGGTACGGGCATCAGGAACTGGTTTAATATTGCTTCAGCATTGGGCACAAGCAGGACTCCATTTCAATGCTTATCACGATTCCAAAGGAGCTTAAATCCTTCCATGTTAAATAGTGAATGGACCGAGGAAGAAGATATTGAACTATGTTCTGCCGTGACATATTTTGGTGATAGCAATTGGCAGTACGTGGCTTCTGTTTTAGAACGGCGGACAGGAACCCAGTGCTCAAATAGATGGAAAAAATCCCTTTGTCCTGAGAAGAAAGGGAGCTTTACACGAGAGGAGGATATACGCTTAACAGTAGCAGTCATGCTTTTTGGGCGGAAATGGAATCAAATAGCTAAATATGTTCCTGGCCGGATCCAATCTCAGTGTAGGGACAGATACCTCAATAGTCTGGATCCTTCTTTGAAATGGGGTGGATGGACTGAGGAAGAGGATTTAAGATTAGAAGCTGCAATTGCCAAGCATGGATATTGCTGGTCTAAGATTGCTGAAGAAGTGCCTCCCCGTACTGATTCTCAATGCCGAAAGAGATGGAAGGTGTTATGTCCGGAACAAGTTCCTTTGCTTCAAGAAGCAAGAAAGAAGCAAAGGTCTATTATTGGTAGTAACTTTGTTGACCGAGAATCTGAACGCCCAACCATTACACTTAATGACTTTCTACCTTTACTTGCGTTAGCTCCGAAATCTGATTTTGGTGCTTCAAACATCCGCAAGAAGCGGAAGTCAAGCAATGTTCCCAAGAAAGCAAGCTCTAAGAAAGGTGCGAAAAGAACTCAACGTACCAAAGAAGTACGAGATAGAGAGTTATATCACGATGATGAGTCCTACCCAGTCTCTGCATGCAGCAATCTTCCCAAGAAGAAGATTAGGTTGAAAAGACGTACAAAAAGTAGTAATTCTCCCCAGGAATTAGTGGATATCTCTTGTAGTGACAAAGTCACTTGCATTGAGGGTTCAGAAAACCAATCTACCTGTATTCCGAATTCTGAAAATCAAGAATCAGACAGCATAACCCTTGCCTGTTTTTTACGCAACAAATCAAATGAGATATTATCTAGATTTACCAAAAATTTGAGTCAGACTTCCTTCTCCTCTAGGATTACTGATGTTCCTGAGCAGGTTGAAAGTCAAAACCCATCTGATGATCAAGGCGGCTTGTCTCGTTCATGTGAGACTGTTGGAACTAAAAATTTGTTTGTGCAGCTGAATGTTGCTTCTGATAGACGAGTTAGAAACCAAGAGGATGACGATGACAATGATGATCATATGACCCTTGCATGCTTTCTGAAAAACAAACCAAAGAAAGAGGGTCAACCTATTAAAGGACATGGCGTACGCTCATCCAAATTAAAAACAGGATCTGTATTAGTAAATGAAGAACATTGTGCAAGCAAGTCAACCTTCATATCTGATGACAGTGAACCATCAGTGTCAAAGCATAATAAAGAGATGGAGACTGTTTTACATGGTTGTGTTGCTAAACCAATTAATATCATTGTGGAAGAAGAGGATGATGAGCGTTTTACTTCCCGCGTGCAAAACAGGCCAAGGAGGGAGCGAAAACGTCCCAGTAGATTTTTGTAG 2943 0.4312 MTPRVEDFENDNLSSTDDDDDDGFKEDMAALSRACMIVVPGADNNSAAEDDVPSAVDPLIDAGTAIVPVATDTDSDDQDDLECLKRVQSLYQPLSVLPPLAPAEAVSDDGDDVDDLETVRAIMKRFGNYNEGLHEGGMRMLIEEDQISSLGCEGDIANGSIHYESDGGELCPFSQDPDEAATEELIENIEMQLSDFVESSEPDAWESSRLPQKRLSCPPVVQCFIDAIKKNRDLQRFLRGKLIELEAKIEENKKIRNRIKILKDFQASCTRRTGNVLSLKKDPRVQLISAKRSSAPKKACKRKRVPAIYYGPEENSRVANYRMVLDRFPLSLDRKKWSKVDRGNLFKGIKQQFQEMVLQLSLSLDRTSSEGLLGDADDMDNIIASVKDLEVTPERIRNFLPKVNWDLLASMYVGGHTGAECESRWLNYEDPLINQGAWTKEEDRSLLLIVQGTGIRNWFNIASALGTSRTPFQCLSRFQRSLNPSMLNSEWTEEEDIELCSAVTYFGDSNWQYVASVLERRTGTQCSNRWKKSLCPEKKGSFTREEDIRLTVAVMLFGRKWNQIAKYVPGRIQSQCRDRYLNSLDPSLKWGGWTEEEDLRLEAAIAKHGYCWSKIAEEVPPRTDSQCRKRWKVLCPEQVPLLQEARKKQRSIIGSNFVDRESERPTITLNDFLPLLALAPKSDFGASNIRKKRKSSNVPKKASSKKGAKRTQRTKEVRDRELYHDDESYPVSACSNLPKKKIRLKRRTKSSNSPQELVDISCSDKVTCIEGSENQSTCIPNSENQESDSITLACFLRNKSNEILSRFTKNLSQTSFSSRITDVPEQVESQNPSDDQGGLSRSCETVGTKNLFVQLNVASDRRVRNQEDDDDNDDHMTLACFLKNKPKKEGQPIKGHGVRSSKLKTGSVLVNEEHCASKSTFISDDSEPSVSKHNKEMETVLHGCVAKPINIIVEEEDDERFTSRVQNRPRRERKRPSRFL* 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00239 980 CDD SANT 593 634 IPR001005 -
Lapu4g00239 980 MobiDBLite consensus disorder prediction 687 722 - -
Lapu4g00239 980 ProSiteProfiles SANT domain profile. 593 636 IPR017884 -
Lapu4g00239 980 ProSiteProfiles Myb-like domain profile. 430 482 IPR001005 -
Lapu4g00239 980 CDD SANT 490 534 IPR001005 -
Lapu4g00239 980 CDD SANT 541 584 IPR001005 -
Lapu4g00239 980 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 483 538 IPR017930 -
Lapu4g00239 980 CDD SANT 437 482 IPR001005 -
Lapu4g00239 980 MobiDBLite consensus disorder prediction 958 980 - -
Lapu4g00239 980 MobiDBLite consensus disorder prediction 819 841 - -
Lapu4g00239 980 Gene3D - 538 590 - -
Lapu4g00239 980 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 539 584 IPR017930 -
Lapu4g00239 980 ProSiteProfiles Myb-like domain profile. 483 534 IPR001005 -
Lapu4g00239 980 Gene3D - 489 537 - -
Lapu4g00239 980 SMART sant 589 637 IPR001005 -
Lapu4g00239 980 SMART sant 538 586 IPR001005 -
Lapu4g00239 980 SMART sant 434 484 IPR001005 -
Lapu4g00239 980 SMART sant 487 536 IPR001005 -
Lapu4g00239 980 SMART sant 333 431 IPR001005 -
Lapu4g00239 980 ProSiteProfiles Myb-like domain profile. 585 635 IPR001005 -
Lapu4g00239 980 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 430 482 IPR017930 -
Lapu4g00239 980 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 15 958 - -
Lapu4g00239 980 Pfam Myb-like DNA-binding domain 438 499 - -
Lapu4g00239 980 ProSiteProfiles Myb-like domain profile. 538 584 IPR001005 -
Lapu4g00239 980 Gene3D - 432 482 - -
Lapu4g00239 980 Gene3D - 592 638 - -
Lapu4g00239 980 MobiDBLite consensus disorder prediction 1 26 - -
Lapu4g00239 980 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 585 639 IPR017930 -
Lapu4g00239 980 MobiDBLite consensus disorder prediction 693 708 - -
Lapu4g00239 980 SUPERFAMILY Homeodomain-like 486 580 IPR009057 -
Lapu4g00239 980 SUPERFAMILY Homeodomain-like 564 636 IPR009057 -
Lapu4g00239 980 Pfam Myb-like DNA-binding domain 592 633 IPR001005 -
Lapu4g00239 980 Pfam Myb-like DNA-binding domain 539 582 IPR001005 -
Lapu4g00239 980 SUPERFAMILY Homeodomain-like 411 483 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00239 Lapu-Chr4 2395299 2404976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00239 210 683 MYB-Related Transcription Factor Family AT3G18100 50.924 2.21e-163 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu4g00239 Myb_DNA-bind_6 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00239 K09422 - gmx:778073 1365.9