Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00238 ATGGGCATCAAGGATCTTCTGAGGTTCATGAAACCTTACATCGAACCAGTCCACATCAAGAAGTACGCCGGAAAACGCGTGGGTATTGATGCGTATTCGTGGCTTCACAAAGGGGCTTATTCGTGTAGTATGGAGCTTTGTCTTGATTCTGATAGTATAAGGAAGTTGCGATACATTGAATACTTTATGCATAGAGTGAACTTGCTTCGCTTCTATAAAATAACTCCGGTTGTTGTATTTGATGGTGGCAATGTTCCTTGCAAGGCGGCAACTGAGGAAGAGAGGAACAGAAAAAGAAGGGCAAATCGAGAATTGGCAATGGCAAAGCTCAAAGAAGGGAATGTTGGTGCAGCTTCAGAGCTCTTCCAGAGAGCAGTAAATATTACTCCGGTTATGGCACATAAGCTAATTCAGACCCTGAAATCAGAGAAAATTGAGTTCGTTGTAGCTCCATATGAAGCAGATGCTCAGTTAGCGTACTTGTCTCACCTTGGAGTAGAAAATGGTGGGGTTGCAGCAGTGATCACAGAAGATAGTGATCTGATAGCATACGGCTGTCCAGATATTATTTTTAAGATGGACCGTCATGGGAATGGTGAAAGAATAGAGTTAGAGAAGGTATTTTCTGCTGCGTCTGGTAGACCTTCATTTCGAAGTTTCAACAAGGAACTTTTCACAGGTATGTGTGTCTTAGCTGGCTGTGATTTTCTTCCATCTGTTCCTGGAATTGGTATTGCTCGAGCTCATGCTTTGGTTTCCAAGTATCGGAACCTAGATCGTATATTGTCCGTTCTTAAGCTCGAGAAAGGCGACCAAATGCCGGAAGATTATGCCAAAACCTTTCAAGAGGCTGTTGCAGTTTTTCAGCATGCTCGAATATATGATACCAATGCTAAAGAGCTGAAACACATGAAGCCTCTTCCACAAAATTTTCTTGAGTCACTTGATGGGAAACTCGATTTCTTGGGGCCAGAAATTGCCCCATCTGTCGTCAAAGCAATAGCAGAAGGAAACTTGAATCCATCAACCAAGAAAGCCTTTGATAAGTCTGAATGTTCTAGATTTCCTCTACACCCCTCTGATTTCCAAAGCTTTGATCAAGTCCAGAAAGCTGAAGTTCCTGCACCATCTAGACTAAAGAATAATTTTTCAATCATTGCCTCCCAATACACCAGAGAAAATAGTACAGTGACAAGGCTCTTAGATGAAGACAAGTATTCCAATGAAGCCTTGGCACTTGAGAAACTAATCATGCCATTGGGAACAATTGGAACAGAAGAAAAGACCATTATATCTGATAACACTCCTTTGAAGGTTCCTGATAACAATCCATTCCGGATAAGAACAAACGAGGAATATACTGACTTGTGCATCTCGGATAACCTTCAAGAAGAGGGGTCGGACGAGAATCTCTCAAGGAAAAGGAAATTTCAGAACATTTCGTCAGATAAAGTTGAAGTCACTGATGAACTGGTTTCAGTGGTGACTGAAGCAGAAAAATCTGATGTATGTTTGATAGTGGAATCCCCAGAAAGTGTAACTTCTGAGACTAAGATAATTGCTGATTTGAAAGGAAGGAGTGAAAGTAAAAAGAAATCCAATAGAAGAAGCAACAGCAAGAAAAAGGGGAGTAATAACAACAGAACACTTCTGAATTTCTTTTCTAGAGTGTAA 1674 0.4098 MGIKDLLRFMKPYIEPVHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSIRKLRYIEYFMHRVNLLRFYKITPVVVFDGGNVPCKAATEEERNRKRRANRELAMAKLKEGNVGAASELFQRAVNITPVMAHKLIQTLKSEKIEFVVAPYEADAQLAYLSHLGVENGGVAAVITEDSDLIAYGCPDIIFKMDRHGNGERIELEKVFSAASGRPSFRSFNKELFTGMCVLAGCDFLPSVPGIGIARAHALVSKYRNLDRILSVLKLEKGDQMPEDYAKTFQEAVAVFQHARIYDTNAKELKHMKPLPQNFLESLDGKLDFLGPEIAPSVVKAIAEGNLNPSTKKAFDKSECSRFPLHPSDFQSFDQVQKAEVPAPSRLKNNFSIIASQYTRENSTVTRLLDEDKYSNEALALEKLIMPLGTIGTEEKTIISDNTPLKVPDNNPFRIRTNEEYTDLCISDNLQEEGSDENLSRKRKFQNISSDKVEVTDELVSVVTEAEKSDVCLIVESPESVTSETKIIADLKGRSESKKKSNRRSNSKKKGSNNNRTLLNFFSRV* 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00238 557 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 221 349 IPR036279 -
Lapu4g00238 557 SMART xpgineu 141 213 IPR006086 GO:0004518
Lapu4g00238 557 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Lapu4g00238 557 CDD H3TH_FEN1-like 223 295 - -
Lapu4g00238 557 Gene3D - 1 212 - -
Lapu4g00238 557 Pfam XPG N-terminal domain 1 100 IPR006085 GO:0004518
Lapu4g00238 557 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Lapu4g00238 557 Coils Coil 91 111 - -
Lapu4g00238 557 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Lapu4g00238 557 CDD PIN_EXO1 1 208 IPR044752 GO:0046872
Lapu4g00238 557 SMART xpgn3 1 102 IPR006085 GO:0004518
Lapu4g00238 557 FunFam exonuclease 1 218 291 - -
Lapu4g00238 557 MobiDBLite consensus disorder prediction 523 548 - -
Lapu4g00238 557 FunFam Exonuclease 1, putative 1 213 - -
Lapu4g00238 557 Gene3D - 218 291 - -
Lapu4g00238 557 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Lapu4g00238 557 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Lapu4g00238 557 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lapu4g00238 557 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Lapu4g00238 557 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 549 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00238 Lapu-Chr4 2389272 2394278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00238 1 315 Core DNA Replication Machinery Family AT5G26680 23.404 5.38e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00238 K10746 - gmx:100817932 888.256