Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00222 ATGCCTGTTGTGACAGAACACATGAAGTGGAGAAGACCAAGAAACCAATTCAGATGCCCCATTTCAGAAGCTGATTCAAATCCTCAAATCCCTTCTACAATCCAATCCTCTAACACCAAATCCACTATCTCGGCTCTCTTATCTTCATTCTCCATCTCTAATGAAACCACACATGTCAGAGACCAAAAAAACAGCAAAAACAACAGAAAATTCTCTACAGCTTCCTTCAGAGGACTCGGTTGCACTGTCAGAGCATCACAGAAGGTTTCGGTGCCCACAGTGATTCGGTCCTCGGCTGATTGGGAAGGGAAAAGGAACAGGAAGAAGAAGTACAGGAGAAACAGTAACAGTAGCAATACATGTGATGGGGTTATTGATGATGTTTCTGGTGGAACATGTGTGGATTTTCAGGATGTTTGGTGTGGTCCTGGAATTGGGTTCTCAACTAATGCTGCTGCTGCATCTGTGGACCGTGTTGTGGCCAGGAAGAATGTGTCTGGAAGAGGAAAACTTGATGTGGTGGAGAGGCAGTCTTCATCTTACTTTGGAAGGCGCACGGTAAAGCCAGAAAGCTTCTCTTTTCTGGATGATGAATCTGATGTCTTCACAGCAAGCTCTGGGTTAGACACTTTTGGAACTGCTAGATTCTATACCCGTGTTCCACATCCTTCTCCTGATGGTCTTGCTGAGATAATGATAATTGGAGGAAGAAGAATAGTAATGGGGGGTCGATTAAACTCACACGACCAATTTAGAGATTGGAGACTTGATGTTGATAACATGTCATACGAGCAATTGCTTGAGCTGGGTGAGAGAATGGGTCATGTCAGCACTGGACTCAAAGAAGATGAGATGGGACACAACATAAGGAAAGTTAAACTTTCAAGTTTAAATGATGTATCAAAGCATCAAGAAGACAAAAAGTGCAGTGTTTGTCAAGAGGAGTATGAACCAAATGATGAATTGGGGAGATTGAAGTGTGACCACAGCTATCATTTTCAGTGTATAAAACAGTGGCTTGTGCATAAAAACTTCTGTCCAGTTTGTAAGCAAGAAGTTGTGGTTCGGCCCTGA 1074 0.4302 MPVVTEHMKWRRPRNQFRCPISEADSNPQIPSTIQSSNTKSTISALLSSFSISNETTHVRDQKNSKNNRKFSTASFRGLGCTVRASQKVSVPTVIRSSADWEGKRNRKKKYRRNSNSSNTCDGVIDDVSGGTCVDFQDVWCGPGIGFSTNAAAASVDRVVARKNVSGRGKLDVVERQSSSYFGRRTVKPESFSFLDDESDVFTASSGLDTFGTARFYTRVPHPSPDGLAEIMIIGGRRIVMGGRLNSHDQFRDWRLDVDNMSYEQLLELGERMGHVSTGLKEDEMGHNIRKVKLSSLNDVSKHQEDKKCSVCQEEYEPNDELGRLKCDHSYHFQCIKQWLVHKNFCPVCKQEVVVRP* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00222 357 SMART ring_2 309 349 IPR001841 -
Lapu4g00222 357 Pfam Ring finger domain 308 350 IPR001841 -
Lapu4g00222 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 355 IPR013083 -
Lapu4g00222 357 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Lapu4g00222 357 FunFam E3 ubiquitin-protein ligase rnf12-A 276 355 - -
Lapu4g00222 357 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 34 353 IPR045191 GO:0061630
Lapu4g00222 357 SUPERFAMILY RING/U-box 302 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00222 Lapu-Chr4 2202991 2209332 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00222 4 264 C3H Transcription Factor Family AT1G73760 41.197 1.86e-45 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00222 - - gmx:100818517 539.265
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00222 4 2202991 2209332 Lapu3g03910 3 62628868 62633008 ECH
Lapu4g00222 4 2202991 2209332 Lapu4g00222 4 2202991 2209332 ECH