Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00211 ATGAAATTGAGGTGTGATTTCTTTGACTGCTGCTTCACTAGCACATCTTCTGACACGTTTCCAAAGCACAGTAACTTGAAGTGGCGAATCTTTCCCTACAAGGAAATTGAAAAAGCCACAAATAATTTTGATCGATCTCATTGTCTTGGAAAGGGAGTAGGAAAGAAAGGCTTTATCAACCAGTACTACGGAACACTTGAGGATGGACGTGAGATTACAGTCCAGCGCTTTAAAGAAGACAGGCGCTACTTGTTGCAAAATTTTATCAATGAAACTGTTATCCTAAATCACTTGCCTCACAAAAATATTGTGTCAATTTATGGGTGTACTTCTCATCATGACGAACCTCTGCTAGTGCATGAATACTTATCCAATGGAAATCTTGCTGCTCATTTTCAAAGTGAAAAGGAAGAAAAGATTACACTACCTTGGCTTAAACGATTGGATATAGCCATTGATATTGCAAATGCATTGAACTATCTTCATTATTATGGCATCATCCACCGCAATGTGAAGTCCAGCAATATTCTCCTAGATGTGAACTTTTCTGCTAAACTTGCTAACCTTCATTTATCATGCAAACTTCCAGATGGAGTTCCTGTTGACACCACCCATGTTACTAGCGATAGAGTAGGTTCAAGTGGTTATATAGACCCAGAGTATTTGACAAAAGGCCAGCTTAGTGTAAAAATTGATGTTTATAGCTTTGGAGTGGTATTGTGTGAGCTTTTATCATCAAAGCTGGCAGTATACTGGATTCTGAACGAGGAGGATAATCTTAGTACCCTTTTAAGCAGAAAAATTGAAAACAAAACTTTGGTGGAGCTGTTTGATCCAACACTTGGGTTCCAATCAAACCTTATGATAAAGCAGGTGATGACTGCTACAGCAGAGCTTGCAGTTCTCTGCATGAAATGTCCACAAGAATCAAGGCCAAACATGGAACAGGTGCAAGAGATTCTCAGTGAAATGAAGCAAGGGAGATATGGAACAAACTCTTCCTCAACTAAAGGTTTGAAAATCTTCCACCATGCTGAACTTGAAGAAGCTACTAACAATTTTGATACTTGCCTTGGAAAGGGAGGTTATGGCACCGTGTACTATGGAAAACTTAAGGATGGACGAGAGGTTGCAATAAAATGTTTCCATGACGAGAATGAGACAGAAGAGACCATTAAGCAATTCATGAAAGAATCTGAGATCTTAGGTCTCTTGCACCATCAAAATCTAGTCTCACTTTATGGTCGCACTTCTCGCCATTGCAAGAAACACATGCTAGTGTATGAGTATATTTCCAATGGCACTCTTTCGAAACATCTTCATGAGTATTCTAGTGCTAAACTGCCATGGCAAACTAGATTGAATATTGCCATTGAAACTGCAACTGCCTTAGTATTTCTTCATGACTCAAATATCATCCATCGTGATGTGAAAGGGAGTAACATTCTGTTGGATGAAAATTTTACTGTTAAAGTTGCAGATTTTGGATTCTCAAGGTCTCTTCCAGATCATGTTACTCACGTTACAACTATTCCAGTAGGAACTCGTGCTTACATAGATCCTGACTACTATATATCTGGAAGGGTCAGTAACAAAAGTGATGTCTATAGCTTTGGAGTGGTCTTGTTTGAACTCATATCATCTATTCGCCCAAGTTTAGTGGCAGGCACAGATAATGAAACTCTAGCACAGTTTGCAAAGAGAAAAATCTTGAACAATGAATTGAACGAGATAGTGGATCCATGCTTTTCGTCTGGTTCTGACAATAACATTTTGGAAATGGTAACAGCAGTGGCAGAGTTAGCATTTCAGTGTGTGCAGTGTCCCAAGGAGCTCAGACCATCCATACAACAGGTGCTAGAGACCCTGGAAGGCATAAAGAAAGGAAAATGGGGATTCAACCAGATAACATAG 1914 0.3934 MKLRCDFFDCCFTSTSSDTFPKHSNLKWRIFPYKEIEKATNNFDRSHCLGKGVGKKGFINQYYGTLEDGREITVQRFKEDRRYLLQNFINETVILNHLPHKNIVSIYGCTSHHDEPLLVHEYLSNGNLAAHFQSEKEEKITLPWLKRLDIAIDIANALNYLHYYGIIHRNVKSSNILLDVNFSAKLANLHLSCKLPDGVPVDTTHVTSDRVGSSGYIDPEYLTKGQLSVKIDVYSFGVVLCELLSSKLAVYWILNEEDNLSTLLSRKIENKTLVELFDPTLGFQSNLMIKQVMTATAELAVLCMKCPQESRPNMEQVQEILSEMKQGRYGTNSSSTKGLKIFHHAELEEATNNFDTCLGKGGYGTVYYGKLKDGREVAIKCFHDENETEETIKQFMKESEILGLLHHQNLVSLYGRTSRHCKKHMLVYEYISNGTLSKHLHEYSSAKLPWQTRLNIAIETATALVFLHDSNIIHRDVKGSNILLDENFTVKVADFGFSRSLPDHVTHVTTIPVGTRAYIDPDYYISGRVSNKSDVYSFGVVLFELISSIRPSLVAGTDNETLAQFAKRKILNNELNEIVDPCFSSGSDNNILEMVTAVAELAFQCVQCPKELRPSIQQVLETLEGIKKGKWGFNQIT* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00211 637 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Lapu4g00211 637 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 333 630 IPR044652 GO:0004672
Lapu4g00211 637 SMART serkin_6 43 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00211 637 SMART serkin_6 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00211 637 Gene3D Phosphorylase Kinase; domain 1 18 122 - -
Lapu4g00211 637 Gene3D Transferase(Phosphotransferase) domain 1 431 632 - -
Lapu4g00211 637 SUPERFAMILY Protein kinase-like (PK-like) 330 627 IPR011009 -
Lapu4g00211 637 Pfam Protein tyrosine and serine/threonine kinase 355 621 IPR001245 GO:0004672|GO:0006468
Lapu4g00211 637 Pfam Protein kinase domain 69 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00211 637 ProSitePatterns Protein kinases ATP-binding region signature. 358 380 IPR017441 GO:0005524
Lapu4g00211 637 SUPERFAMILY Protein kinase-like (PK-like) 21 324 IPR011009 -
Lapu4g00211 637 ProSiteProfiles Protein kinase domain profile. 352 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00211 637 Gene3D Transferase(Phosphotransferase) domain 1 123 326 - -
Lapu4g00211 637 FunFam Wall-associated receptor kinase 3 431 636 - -
Lapu4g00211 637 Gene3D Phosphorylase Kinase; domain 1 327 430 - -
Lapu4g00211 637 ProSiteProfiles Protein kinase domain profile. 43 321 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00211 Lapu-Chr4 2111722 2115884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00211 339 627 Receptor kinase-like Gene Family AT1G25390 51.525 4.91e-89 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lapu4g00211 PK_Tyr_Ser-Thr 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00211 - - vra:106773095 1144.8