Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00209 ATGGATTATAAGCACAATCGCATCCTCACGACGCCCCTTGCCTTCGCACTCACTGTGTCTTGGTTGCTGTTCATCACTTTGCCACACTCCCTCTCTCAACCACCACCACCACCACCACCACCACCGGTTAATTTATCTTTTTGTAGCGAGCAGTCATACGTGTGCAACCCAAGCGTGTCCGTCATCTTGGATCCTTCCTGGGAATTCACTCTCTCAAAACCACCCTCTCAATGTATCGGCACCGAACCATCATTCCAGCTTAGTTGCTATACTCGTGATCAATCTCAAAATTTCAGAGTGAAGGATATCGAAAACACCAATCACACCATGAAAGTGATGCTAACACACCCCGTCAATGATGCTTGTTCTCCTGATTTTATGAACATTTACGGGAATTTGAGCTACATTCTGTTCCAGTATTACGCCTCAGTGCACAACATCACCCTTTTCTTCGATGGTTGTCCTCACATCCCAGATTTCCCGGTAAAACGCAACTTTACGTGCGGGAATGCTTTGCATTATTTCGTGGAAGGATACAAGGAAAAGGAGATGCTCGACAATTACCCAAAGCTTGAGGATTGCAAGGGACGTTTGTACGTGGCCACTGCCGCTCCTCTCGATCATTATGATGATAGTGATGATGGAGCTGGAGTTCTGAAAGAAGCTCTCAGTGATGGGTTTCGGGTGTCCTATGGTGTTCCTCCAGATTGCAGAGCATGCAGCGAAAGTAACAGAACTTGCGAGAGATCTGGTTATGATGATCAACTAGTTTCATGCAAATACTATTGCCCAAATCAACTCTGTTCTCCCAAAACAAGTAGCACATTGAACGTGCCTAGGAAAATCATTATAGGTGTTTGTTCTGCTGTAGTGGGAGCACTTATAGTGGGCTTTTGCGTCTATCTCTTTATTCGTAGAAGGAAGAATAGTTATGTAATGTCATATATGCAATCTCGGAGCCTCTCTTCTGATCCATCTTCAAAAGACACTGAGAAGGGAACTCAAAGCTTCACTCAAAGCAATGTACCGGGAGTCCATCTCTTCTCCTATGAGGAACTAGAAGAGGCCACAAATTACTTTGACTCATCTAAAGAACTAGGAGAAGGGGGCTTTGGTATAGTGTATTTTGGCAAACTGCGAGATGGACGTTCTGTTGCAGTGAAGAGGTTGTATGAGAACAACTACAGGATAGTTGCACAGTTCATGAATGAAATTAAAATCCTAACTCGTATAGTTCATCCAAATCTTGTGAAGTTATACGGATGCACCTCTCGCCACAGTCGTGAACTTTTGCTAGTATATGAGTATATTCCCAATGGAACTGTTGCAGATCATCTTCATGGTCAACGATCTAAACCTGGAACACCCCCTTGGAATATTAGAATGAATATTGCTGTGGAGACTGCAAGTGCCCTGAAATTTCTTCATCTCAGAGACATCATCCACAGAGATGTTAAAACCAACAATATTCTTCTTGACAGTAACTTCCGTGTCAAAGTGGCAGATTTTGGACTCTCGCGTCTGTTTCCACATGAGGTCACCCATGTTTCAACAGCTCCACAAGGGACTCCAGGTTATGTGGATCCAGAGTACCACGAGTGCTACCAGCTTACTAACAAAAGTGATGTCTACAGCTTTGGAGTGGTGCTGGTTGAGCTGATATCATCCCTGCCTGCTGTTGATATCACAAGGCATAGACATGAAATCAATTTGGCCAACATGGCCGTTAACAAGATTCACAATCAGACACTGCATGAGCTTGTGGATCCAAACCTTGGTTTTGAATCAGATTTCAAGGTAAGGAAAATGATAAGTGCTGTGGCTGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGATATGAGACCTTCTATGGAAGAAGTGGTGGACACTCTGAAGGATATACAGAGTGATGGCAAAAACAAAAGCCAGCCAGAGGTAATGGATATCTCAAGCACATCTGATGATGTTGTGTTGCTGAAGGATGACCCTCCTCCACCATCACCTGATTCTAATGCTGTGAGCAAGACAACAACGCCAAATACTAGTGGATAA 2055 0.4389 MDYKHNRILTTPLAFALTVSWLLFITLPHSLSQPPPPPPPPPVNLSFCSEQSYVCNPSVSVILDPSWEFTLSKPPSQCIGTEPSFQLSCYTRDQSQNFRVKDIENTNHTMKVMLTHPVNDACSPDFMNIYGNLSYILFQYYASVHNITLFFDGCPHIPDFPVKRNFTCGNALHYFVEGYKEKEMLDNYPKLEDCKGRLYVATAAPLDHYDDSDDGAGVLKEALSDGFRVSYGVPPDCRACSESNRTCERSGYDDQLVSCKYYCPNQLCSPKTSSTLNVPRKIIIGVCSAVVGALIVGFCVYLFIRRRKNSYVMSYMQSRSLSSDPSSKDTEKGTQSFTQSNVPGVHLFSYEELEEATNYFDSSKELGEGGFGIVYFGKLRDGRSVAVKRLYENNYRIVAQFMNEIKILTRIVHPNLVKLYGCTSRHSRELLLVYEYIPNGTVADHLHGQRSKPGTPPWNIRMNIAVETASALKFLHLRDIIHRDVKTNNILLDSNFRVKVADFGLSRLFPHEVTHVSTAPQGTPGYVDPEYHECYQLTNKSDVYSFGVVLVELISSLPAVDITRHRHEINLANMAVNKIHNQTLHELVDPNLGFESDFKVRKMISAVAELAFQCLQSSKDMRPSMEEVVDTLKDIQSDGKNKSQPEVMDISSTSDDVVLLKDDPPPPSPDSNAVSKTTTPNTSG* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00209 684 Gene3D Transferase(Phosphotransferase) domain 1 437 658 - -
Lapu4g00209 684 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 48 682 IPR044652 GO:0004672
Lapu4g00209 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 480 492 IPR008271 GO:0004672|GO:0006468
Lapu4g00209 684 Gene3D Phosphorylase Kinase; domain 1 330 436 - -
Lapu4g00209 684 ProSiteProfiles Protein kinase domain profile. 360 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00209 684 SMART serkin_6 360 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00209 684 FunFam Wall-associated receptor kinase-like 20 437 645 - -
Lapu4g00209 684 ProSitePatterns Protein kinases ATP-binding region signature. 366 388 IPR017441 GO:0005524
Lapu4g00209 684 Pfam Protein kinase domain 361 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00209 684 SUPERFAMILY Protein kinase-like (PK-like) 336 636 IPR011009 -
Lapu4g00209 684 MobiDBLite consensus disorder prediction 636 684 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00209 Lapu-Chr4 2077457 2087958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00209 227 684 Receptor kinase-like Gene Family AT1G25390 51.812 1.63e-145 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lapu4g00209 Pkinase 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00209 - - gmx:100800873 682.174