Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00208 ATGACTAATTCATTCAAAGTTAAACTTGGTCAAGGTGGTTTTGGTGCAGTATACGAAGGAAAGCTACTCACGGGTAGCCCTGTGGCTGTGAAATTATTGAATGCATCCAAAAGAAATGGTGAAGAGTTTATCAACGAGGTTGCCAGCATTAGCAGAACATCTCATGTTAATATTGTCACACTTCTTGGATTTTGTTTGGAAGGCAGCAAAAAAGCTCTCATCTATGAGTTTATGGCTAATGGTTCTTTGGAAAAGTTTATCTACAAAAGAGGGCCAGCAACAATTGCATCTTTGAGCTGGGAGAAACTGTATCAAATTTCAATAGGAATAGCTCGAGGGTTGGAGTACTTGCACAGGGGCTGCAATACTAAAATTTTACATTTTGACATAAAGCCGCATAATATTCTTTTGGATGAGAACCTCTGTCCTAAAATATCAGATTTTGGACTAGCAAAGCTCTGTCCTAGGAATGAAAGCATTATTTCTATGTCTGATACAAGAGGGACAATGGGGTATGTAGCTCCAGAAATGTTCAACAGACATTTTGGTGGAGTTTCACAAAAGTCAGATGTTTATAGTTATGGAATGATGCTACTAGAAATGGTGGGAGGAAGGAATAACATTAATGCTGAAGCTAGTCGTACAAGTGAGATATACTTTCCACATTTGGTATACAAGAGACTTGAGTTGAATAACGATGTAAGACCAGATGAAGTGATGAATATAGAAGAAAATGAGATTGCAAAAAGAATGACTATAGTGGGCTTATGGTGCATTCAAACACTTCCAAATCATAGACCTACAATGAGTAGAGTGGTAGATATGTTGGAAGGTAACATGAATTCCTTGGAAATGCCTCCAAAACCTTTGCTTTCTTCTCCTACTAGATCAGTAACAGAATCTTCCTCTTGA 912 0.3783 MTNSFKVKLGQGGFGAVYEGKLLTGSPVAVKLLNASKRNGEEFINEVASISRTSHVNIVTLLGFCLEGSKKALIYEFMANGSLEKFIYKRGPATIASLSWEKLYQISIGIARGLEYLHRGCNTKILHFDIKPHNILLDENLCPKISDFGLAKLCPRNESIISMSDTRGTMGYVAPEMFNRHFGGVSQKSDVYSYGMMLLEMVGGRNNINAEASRTSEIYFPHLVYKRLELNNDVRPDEVMNIEENEIAKRMTIVGLWCIQTLPNHRPTMSRVVDMLEGNMNSLEMPPKPLLSSPTRSVTESSS* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00208 303 PIRSF ILK 4 285 - -
Lapu4g00208 303 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Lapu4g00208 303 Gene3D Transferase(Phosphotransferase) domain 1 79 286 - -
Lapu4g00208 303 SUPERFAMILY Protein kinase-like (PK-like) 7 277 IPR011009 -
Lapu4g00208 303 FunFam PR5-like receptor kinase 78 288 - -
Lapu4g00208 303 Pfam Protein kinase domain 6 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00208 303 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 295 IPR045874 GO:0004672
Lapu4g00208 303 ProSiteProfiles Protein kinase domain profile. 3 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00208 303 MobiDBLite consensus disorder prediction 286 303 - -
Lapu4g00208 303 MobiDBLite consensus disorder prediction 283 303 - -
Lapu4g00208 303 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Lapu4g00208 303 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lapu4g00208 303 SMART serkin_6 3 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00208 Lapu-Chr4 2074682 2075761 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00208 1 303 Receptor kinase-like Gene Family AT1G66910 58.632 3.07e-125 370
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu4g00208 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00208 - - pvu:PHAVU_004G155400g 529.635