Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00205 ATGAGAGTGGTGCGACCAGACCTTGCCCTAAATGTTTGTTCTCCGCATGTTGTCAACACTGATCTTGGTTCTGGTTTGTTCAAGTATGGTTCATCCGTGTACAACATCACCATCTTCTACAACTGCTCCTTGGCTATAGAGGCCTCTTTTGGTCACTTCTCGTGTGGAAAAGAGATTGCTATCTTTCGTGACGGTCCGCAAGATGAGCTGCTGAAAAAATTTCCATGGCTTGTGGCATGCAGACGATATGTGGAAGTTCCTGTAGACCTTGTTCCTTATGACAACAATGGTGGACAAGATTTTCTGAAACAAGCTTTCACTCGCGGGTTTCCCATCGACTATGCTGTTCTCAGCACTCACAAAAGTGCGACAGTTGCAGGATTGTCGATAATATGTATTGCTATTCTCTATTTGAGATATAGGTCTTCAACCTGGAAAGTAGATTTAAGGTTGATTACAAAGAGTAACAAAAAGATTGAAGTGTTCCTGCAAAATCAGGGTGCTCTGACCCTGAAAAGATATAAATTATCAGATTTGAAGAAAATGACCAACAACTTCAAAGTTAAGTTGGGACAAGGTGGTTTTGGTGCGGTGTACAAAGGAAAACTATCTGAAGGTAGTCATGTGGCTGTTAAGATATTGAATACGTCCAAAACAAATGGTGAAGACTTTATGAATGAGGTTGCAAGCATTAGTAGAACTTCTCATGTTAATGTTGTCACTCTTCTCGGGTTCTGTTTGGAAGGTCGCAAGAGAGCTCTCATTTATGAATTCATGCCCTATGGTTCCCTTGACAAGCTCATTTATAGAAATGGACCTGAAGCAACTACACCCTTGAGTTGGGACAATGTATATCAAATTGCAATGGGGATAGCTAGAGGATTAGAATACTTGCATATAGGATGTAACACTCGAATCTTGCATTTTGATATAAAACCACATAACATTCTCTTGGATGATAATCTTTGTCCCAAGATATCAGATTTTGGATTAGCCAAACTATGTCCAAGAAATGAAAGCATTATTTCTATGTCAGATGCTAGAGGAACAATGGGTTATGTAGCTCCAGAAGTCTTGAATAGACATTTTGCAGGAGTTTCACATAAGTCTGATGTTTATAGCTATGGAATGATGCTTCTAGAAATGGTTGGAGGGAGGAAGAACATTAATTGTGAAGCCATTCACACAAGTGAAATATACTTCCCGCATTGGATATACAAGAGGCTGGAGTTGAATACTGATTTGAGAATAGAAGAAGAGATTGCGCCAGAAAAAAATGAGATAGTAAAGAGATTGGTCATAGTAGGTCTGTGGTGCATTCAAACCTTCCCAAATGGTAGACCAACAATGAGTAGAGTGATAGATATGTTGGAAGCCAGCATAAATTCCCTACAAATCCCACCAAAACCTTTGCTTTCTTCTCCAACTACATCACTACCAGAATCTTCCATTTCTTTAATTTAA 1464 0.3934 MRVVRPDLALNVCSPHVVNTDLGSGLFKYGSSVYNITIFYNCSLAIEASFGHFSCGKEIAIFRDGPQDELLKKFPWLVACRRYVEVPVDLVPYDNNGGQDFLKQAFTRGFPIDYAVLSTHKSATVAGLSIICIAILYLRYRSSTWKVDLRLITKSNKKIEVFLQNQGALTLKRYKLSDLKKMTNNFKVKLGQGGFGAVYKGKLSEGSHVAVKILNTSKTNGEDFMNEVASISRTSHVNVVTLLGFCLEGRKRALIYEFMPYGSLDKLIYRNGPEATTPLSWDNVYQIAMGIARGLEYLHIGCNTRILHFDIKPHNILLDDNLCPKISDFGLAKLCPRNESIISMSDARGTMGYVAPEVLNRHFAGVSHKSDVYSYGMMLLEMVGGRKNINCEAIHTSEIYFPHWIYKRLELNTDLRIEEEIAPEKNEIVKRLVIVGLWCIQTFPNGRPTMSRVIDMLEASINSLQIPPKPLLSSPTTSLPESSISLI* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00205 487 Gene3D Transferase(Phosphotransferase) domain 1 259 470 - -
Lapu4g00205 487 Pfam Protein kinase domain 187 454 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00205 487 FunFam serine/threonine-protein kinase PBS1-like 153 258 - -
Lapu4g00205 487 Gene3D Phosphorylase Kinase; domain 1 145 258 - -
Lapu4g00205 487 ProSiteProfiles Protein kinase domain profile. 184 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00205 487 PANTHER RUST RESISTANCE KINASE LR10-RELATED 154 474 IPR045874 GO:0004672
Lapu4g00205 487 FunFam PR5-like receptor kinase 259 469 - -
Lapu4g00205 487 SUPERFAMILY Protein kinase-like (PK-like) 164 458 IPR011009 -
Lapu4g00205 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672|GO:0006468
Lapu4g00205 487 ProSitePatterns Protein kinases ATP-binding region signature. 190 212 IPR017441 GO:0005524
Lapu4g00205 487 SMART serkin_6 184 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00205 Lapu-Chr4 2041647 2044949 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00205 153 482 Receptor kinase-like Gene Family AT5G38280 56.119 2.47e-124 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lapu4g00205 Pkinase 6.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00205 - - gmx:100798745 604.364