Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00198 ATGACCTTTATCTCCAGGTTGTGCCCCTGTTGGTGCAAGGGCGGCGCAACCTCCGACGACGGAGGCGCCGATCACCACGACGACCCTAACGGGACAGGGGACTCCTTGGACCTGATCTTCGACCTCCACACTCTCCAACTGGCCACCAACTTCTTCTCCAGCCTCAACCAGCTAGGTCATGGAGGCTTTGGTCCTGTCTTCAAGGGAATGATGCCAAATGGTCAAGAAGTGGCGGTTAAGAAGCTGTCATTGGAATCTAGACAAGGAGTTAAAGAATTCACCAATGAAGTTATGCTATTACTCAGAATTCAGCACAAGAACTTGGTTACATTACTTGGTTGTTGTGCAGAAGGGCCTGAAAAGATGCTTGTCTACGAGTATCTACCTAACAAAAGCCTTGATCACTTTCTGTTTGAAAAGAGGAAGTCTTCATCTTTGGACTGGGCAAAACGATTCGGAATAGTTACTGGTGTGGCAAGAGGACTTCTCTACCTGCACGAAGAGGCCCCAGAAAGAATTATACATAGGGACATTAAAGCTAGTAACATATTGTTGGATGACAAGTTAACTCCGAAAATTTCAGACTTTGGGTTGGCAAGGCTGTTTCCTGGGGAGGACACTCACGTGCAGACATTTAGGATTTCCGGTACACATGGTTACATGGCTCCTGAATATGCATTGCGGGGATATCTGTCAGTGAAGACGGATGTTTTCAGTTATGGAGTTCTGGTGTTGGAAATAGTTAGTGGGAGAAAAAACCAAGATCCACGACTTGGTCCAGAAAAAGCAGATCTCTTGAGCTATGCATGGTCGCTTTATCAAGGAGGGAGGATAATGGACTTGATTGATCCAGCCCTCGGTAAATACAATGGTGATGAGGCAGCAATGTGCATTCAGCTAGGTTTGTTGTGCTGCCAAGCAAGCATAATTGAAAGACCTGACATGAATGCTGTCCATCTCATGCTCTCAAGCGACTCCTTCACTTTGCCAAGACCAGGTAAACCAGGAATTCAAGGTCGTACAGGACGTTGGACTACAACTACATCTTCTGCTATGACCAATACCAATACCCATGGTAGTAATACTACCAGGGTCTCTGGTGGTAGTGGTAGTTTTGTAGAGGATTATTCTAGAAATTCTATATCTACCTCTTCTTTTGATGAAGGCAGATGA 1173 0.4569 MTFISRLCPCWCKGGATSDDGGADHHDDPNGTGDSLDLIFDLHTLQLATNFFSSLNQLGHGGFGPVFKGMMPNGQEVAVKKLSLESRQGVKEFTNEVMLLLRIQHKNLVTLLGCCAEGPEKMLVYEYLPNKSLDHFLFEKRKSSSLDWAKRFGIVTGVARGLLYLHEEAPERIIHRDIKASNILLDDKLTPKISDFGLARLFPGEDTHVQTFRISGTHGYMAPEYALRGYLSVKTDVFSYGVLVLEIVSGRKNQDPRLGPEKADLLSYAWSLYQGGRIMDLIDPALGKYNGDEAAMCIQLGLLCCQASIIERPDMNAVHLMLSSDSFTLPRPGKPGIQGRTGRWTTTTSSAMTNTNTHGSNTTRVSGGSGSFVEDYSRNSISTSSFDEGR* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00198 390 SUPERFAMILY Protein kinase-like (PK-like) 37 322 IPR011009 -
Lapu4g00198 390 Gene3D Phosphorylase Kinase; domain 1 26 127 - -
Lapu4g00198 390 FunFam Cysteine-rich receptor-like protein kinase 2 25 127 - -
Lapu4g00198 390 CDD STKc_IRAK 58 322 - -
Lapu4g00198 390 SMART serkin_6 52 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00198 390 Pfam Protein tyrosine and serine/threonine kinase 55 254 IPR001245 GO:0004672|GO:0006468
Lapu4g00198 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Lapu4g00198 390 FunFam Cysteine-rich receptor-like protein kinase 41 128 328 - -
Lapu4g00198 390 Gene3D Transferase(Phosphotransferase) domain 1 128 328 - -
Lapu4g00198 390 ProSiteProfiles Protein kinase domain profile. 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00198 390 MobiDBLite consensus disorder prediction 349 371 - -
Lapu4g00198 390 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 37 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00198 Lapu-Chr4 1960563 1964085 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00198 28 339 Receptor kinase-like Gene Family AT4G11490 50.637 1.82e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lapu4g00198 PK_Tyr_Ser-Thr 6.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00198 - - gmx:100790304 645.195