Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00196 ATGAGACTTGCCATGTCTACTCCTTCGAAGAGCATCACATGTTCCAATGAAGATGTTAATGAACTTAGAAGAGGGCCATGGACTGCTGAAGAGGATGATCTTCTTGTCAGTTACATTGCCAATCATGGAGAAGGGAGATGGAATTTGCTTGCTATACGTTCAGGATTAAGGAGAACAGGAAAGAGTTGCAGATTAAGGTGGCTAAATTATCTAAAGCCAGATGTTAAACGAGGCAATTTAACCTCAGAGGAGCAGCTTCTGATTTTTGAACTCCACTCAAAGTGGGGTAACAGGTGGTCAAAAATTGCACAACAGCTGCCAGGCAGAACAGACAATGAAATAAAGAACTATTGGAGAACAAGGATTCAGAAACAAGCAAGATATGTAAAATTTGAGACACATAGAACAACAGGATTTCTAGAATTTGTCAAGGGTCTACAGATGACAAGATGTCTTCATAAAGCACAAGAATCATCTCCTTCAGCCATGTCACTCAAAGACCAAGAAATTCCTTTGCCTTTTGATGGTGCTTCTCATTTTTCATCATTTGGGATTGGGATAGCACCAAAAACACAAATCACTTGCCAGGGAGGTCTCAATCATTTGAATCAGCATGAGCAGAACTCAGACTCTGAACACAACAATGGTTCAAGCATTTCCAATTCAGAATCAGTAAATATCCAAAATATGATTCAGCCTTTGGGGTATACTTCTAATCAATTTCAGGTCTTAGATAACTATGATTTTGGCATCTGTTCATATGATGGTTACAGCATAGATAGCAATGCCTATGACATGGATGCCTTCAACCTGACAGCCACAGTGGATGCTGAGAATATGGAATTCCCAGTGATTGGTTGCCAAATATCAGAAACCAACTGGCTAAATATGGAATCTGAATGTAGCACATGGAATAATGATGAATTATGGCAATTTAGGAACATA 945 0.3926 MRLAMSTPSKSITCSNEDVNELRRGPWTAEEDDLLVSYIANHGEGRWNLLAIRSGLRRTGKSCRLRWLNYLKPDVKRGNLTSEEQLLIFELHSKWGNRWSKIAQQLPGRTDNEIKNYWRTRIQKQARYVKFETHRTTGFLEFVKGLQMTRCLHKAQESSPSAMSLKDQEIPLPFDGASHFSSFGIGIAPKTQITCQGGLNHLNQHEQNSDSEHNNGSSISNSESVNIQNMIQPLGYTSNQFQVLDNYDFGICSYDGYSIDSNAYDMDAFNLTATVDAENMEFPVIGCQISETNWLNMESECSTWNNDELWQFRNI 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00196 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 72 126 IPR017930 -
Lapu4g00196 315 ProSiteProfiles Myb-like domain profile. 72 122 IPR001005 -
Lapu4g00196 315 Gene3D - 15 77 - -
Lapu4g00196 315 Gene3D - 81 123 - -
Lapu4g00196 315 SUPERFAMILY Homeodomain-like 22 118 IPR009057 -
Lapu4g00196 315 SMART sant 23 73 IPR001005 -
Lapu4g00196 315 SMART sant 76 124 IPR001005 -
Lapu4g00196 315 CDD SANT 81 120 IPR001005 -
Lapu4g00196 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 71 IPR017930 -
Lapu4g00196 315 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 221 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lapu4g00196 315 FunFam Myb transcription factor 24 76 - -
Lapu4g00196 315 ProSiteProfiles Myb-like domain profile. 19 71 IPR001005 -
Lapu4g00196 315 CDD SANT 26 71 IPR001005 -
Lapu4g00196 315 MobiDBLite consensus disorder prediction 201 221 - -
Lapu4g00196 315 FunFam MYB transcription factor 80 122 - -
Lapu4g00196 315 Pfam Myb-like DNA-binding domain 77 120 IPR001005 -
Lapu4g00196 315 Pfam Myb-like DNA-binding domain 24 71 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00196 Lapu-Chr4 1953747 1954989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00196 21 164 MYB Transcription Factor Family AT1G68320 64.583 2.05e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu4g00196 Myb_DNA-binding 2.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00196 K09422 - gmx:100778425 509.22