Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00195 ATGGCTGAATTCACAGAAAATTTGCAACTGCAAAGCATCAGACCCTCCTCCTTTCCATTCTTAGACATTGATCCAAGCATGGAAATCTTAAACCAATTCATTGGGATGAACCAACATGTCATAGACAACTCAAACTTGACTATGCACAACTTGATGCCATTCTCCTGTGACACCTTCTTGGGCCCTCAAGAACCTGAGTTTCCAGGAAACATGGAGGAAAATTTCCCTGCCCTTGTCCATCATGTCAACCACAATGCACTTCCCGTTTCCCTTCCCATTTTCCAAGCAGAAAATGAGATCCATGAAGGTAAAAAGAGGAAATCAATGGATCTTCCAGAGACCAGTTCAGCTAACTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAGATAAAACATAGTTCTGGAAGAGGAAAAAGAGCAAAAAGCAATGTGACAGAAGAGGAGAAAGCAAAGGAAGTGGTCCATGTCAGAGCCAGAAGAGGTCAAGCTACCGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAACGAGAAATTAAGGTGCTTACAGAATATTGTTCCAGGATGTTACAAGACCATGGGTATGGCAGTAATGTTGGATGAAATCATAAACTATGTGCAGTCCTTGCAGCATCAAGTAGAGTTCCTTTCTTTGAAGCTTACTGCAGCAAGTACCTTTTATGACTTCAATTCCGAGACAGATGCTTTAGAAACAATGCAGAGAGCAAGAGCATCAGAGGCAAAAGAGTTAGGGAAGTATAAGAGAGAAGGGTATGGAGGAGTTGCTTGCTTTCAACCAAGTTGGCCACTTTGA 822 0.4234 MAEFTENLQLQSIRPSSFPFLDIDPSMEILNQFIGMNQHVIDNSNLTMHNLMPFSCDTFLGPQEPEFPGNMEENFPALVHHVNHNALPVSLPIFQAENEIHEGKKRKSMDLPETSSANSTPAVSESGSKIKHSSGRGKRAKSNVTEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTFYDFNSETDALETMQRARASEAKELGKYKREGYGGVACFQPSWPL* 274
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00195 273 SMART finulus 168 218 IPR011598 GO:0046983
Lapu4g00195 273 MobiDBLite consensus disorder prediction 112 130 - -
Lapu4g00195 273 CDD bHLH_AtBPE_like 152 237 - -
Lapu4g00195 273 MobiDBLite consensus disorder prediction 103 170 - -
Lapu4g00195 273 Gene3D - 162 224 IPR036638 GO:0046983
Lapu4g00195 273 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 101 239 IPR024097 GO:0006355
Lapu4g00195 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Lapu4g00195 273 FunFam transcription factor BEE 3-like 159 230 - -
Lapu4g00195 273 MobiDBLite consensus disorder prediction 139 170 - -
Lapu4g00195 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 228 IPR036638 GO:0046983
Lapu4g00195 273 Coils Coil 239 259 - -
Lapu4g00195 273 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lapu4g00195 Lapu-Chr4 1938362 1939981 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00195 84 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 55.204 3.38e-63 197
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu4g00195 HLH 0.00018 No_clan
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00195 - - gmx:100806942 507.679