Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00183 ATGAAAGAAGCCAGTGCATTAGGAGCTAGAACTGCACGAGCATGCGAGAGCTGTCTGAAAGTAAGAGCACGGTGGTATTGTGCAGCTGATGATGCTTTCCTTTGTCATGGCTGTGACAACATGGTTCACTCGGCAAATCAATTAGCAAGCAGGCACGAAAGGGTTAAGCTTCAAACTGCATCCTCTAAGGTCAACTACTCAGTGACCCCTAATCATAACAATAAGGTAGCATGGCACAGCGGATTCACACGCAAGGCAAGAACACCACGCCACAACAAGCACGTATCGGTGCAGCTACAACCACAACAAAAGAAAATACATGAAGAAGGAGAAGACGAAGAATTGTTTTTTAATAACACCATTAGTCTTCCCCTTGTGCCAGAGCTTGGAAGTGAAGAAGCACTGCATAATGACGAGAGTGAGGAGCAACTACTGTGTCGCGTGCCAGTGTTTGACGCTGAGCTTTGTAGTATATACAATGAAGTGAAGGACGAGGTTTTAGTTGGTGAAGAAGTCCTTGACTTAGAAAATTTTTCTTCCGAGTTTCTACCATCAGATATGGATCTTGCTGAGTTCGCTGCTGATGTGGAAAGCTTACTTGGAAACGGAGCTGATGAGGATTCATCTGAGCAAGTGAAAGGATCAGAACCCGTGCTTGATTGCAAAGAAGAAGATGATGAAATGGATGCACGTGTTGATGGATTTGGAGCTAAAGATGCAATGGTGAAGGTCAAAGATGAAGAAGAACTTGATGCCGACACTTGCCATTTGGATTCGATTATTCTTGACATGAACAGCGAGGCCTTTAATTGGAATGATATTGTTGAGTCAGAATCACAATCTCAGGAACAGGAAGAGGAGGAGAGTAAAGTGGGAATCAATAAGAAGGACATATTTTTGAGGCTAAACTATGAAGAGGTTATTACTGCTTGGGCCAGTCAAGGTTCTCCATGGACAACAGGAACCCCACCTAAGTTCAACTCTGATGATTGCTGGCCAGATTTCTTGGGTTCGAATGATGGGGATGTTCAATGCTGTTATGGGGAAATGAGAAGTTTAAGAGGGCATGCAGATGGGGGAAGAGAAGCAAGAGTGTCAAGATACCGAGAGAAGAGAAGAACTCGTTTATTTGCAAAGAAGATAAGGTATGAAGTGAGGAAGTTGAATGCGGAGAAAAGACCTAGAATGAAAGGTCGATTTGTGAAGAGAACATCCTTTGTTGGAGTCCTAGCTAGTACTGATGGAAATGGTAGCTCCTCTCAGCATTTTCATGGCTTTGGTATTCAATTTCATAAGCCCTTTTTCATTGTTGCTTATCTATATAAGAAAATGTAA 1335 0.4285 MKEASALGARTARACESCLKVRARWYCAADDAFLCHGCDNMVHSANQLASRHERVKLQTASSKVNYSVTPNHNNKVAWHSGFTRKARTPRHNKHVSVQLQPQQKKIHEEGEDEELFFNNTISLPLVPELGSEEALHNDESEEQLLCRVPVFDAELCSIYNEVKDEVLVGEEVLDLENFSSEFLPSDMDLAEFAADVESLLGNGADEDSSEQVKGSEPVLDCKEEDDEMDARVDGFGAKDAMVKVKDEEELDADTCHLDSIILDMNSEAFNWNDIVESESQSQEQEEEESKVGINKKDIFLRLNYEEVITAWASQGSPWTTGTPPKFNSDDCWPDFLGSNDGDVQCCYGEMRSLRGHADGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGVLASTDGNGSSSQHFHGFGIQFHKPFFIVAYLYKKM* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00183 444 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Lapu4g00183 444 SMART bboxneu5 10 57 IPR000315 GO:0008270
Lapu4g00183 444 Pfam B-box zinc finger 12 57 IPR000315 GO:0008270
Lapu4g00183 444 Pfam CCT motif 361 403 IPR010402 GO:0005515
Lapu4g00183 444 CDD Bbox1_BBX-like 14 55 - -
Lapu4g00183 444 ProSiteProfiles CCT domain profile. 361 403 IPR010402 GO:0005515
Lapu4g00183 444 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 5 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00183 Lapu-Chr4 1837639 1841701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00183 4 403 C2C2-CO-like Transcription Factor Family AT1G25440 43.059 1.56e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lapu4g00183 zf-B_box 3e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00183 - - gmx:100802113 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu3g03830 3 61844721 61846623 Lapu4g00183 4 1837639 1841701 PCT