Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00181 ATGTCTGGCATTCCAAGACAAAGTCGGCAACAAGGAATGGAATGTAAGAGAGGAAAAGACAAGGTCCCAGCCAAAGAAGAAAACGTAAAAACAACGAGGAAAATTAGAATTGTGTACACTGACCCTGATGCTACAGATTACTCAAGTGAAGAAGATGATAAGTTGTTGAGCAATGGCTACAAGTTAAATGATTGCTCCAAGCGGGTTGTCAAGGAAATCTTGCTTCCATCCATGCAAAGCAAATTACAAGAAGATAATTCTTCACAAGATGTAAAGAGTGAAAAGATCAAATCAAGTCCAGAGCATTGTTCAAGCAGAAGGATGAGGAAACCATCAAGCATGTACAAAGGGGTTCAACGTAGAAAATGGGGGAAATATGTAGCAGAAATTAGAGACCCTATTCAAGGGGTCAGAGTGTGGCTTGGTACATTTGATACTGAACAAGAGGCTGCTATGGCTTATGAGAGAAAGAAGAATGAGTTTGAAAGCTATTTGTTGGCTTCGAGCAAAAGGGATGCTTGTGAAAATTCCAAAGAAGTGTTGTTTCATCCATCTCCATCATCAGTGCTTGATGTCTGCACTACAAAAGCTACACTAGATGTTAATGACCTGAATGATTCAGTCAAAGTAAAGGTCAATGTGGAAAAAGTTGGTGAAGAAGGAGGCATTGATGCGGAAGCAGTTAATAGTGAAGATAATTCAACCCAATATTTGCTAGAGGAGCCAGTTGTGCCATCATTGTTTGGTCTTGATGATTTCTATTTGGATGAAGCAGAGAAAAGGGGAATGCTGCTTGGTAATGACTTTTACAATTTCTTGGACAATGACATGAAAGGTGGTTTTATGTGGAATGTCGAACATGGGGAAGCTACTGTCCTTCCCCCTGTAGACAGTGATTTTGATGAGTTAGCTTGGATTGATGAAACTCTGGATTGGGAAAGCTCATAA 948 0.3998 MSGIPRQSRQQGMECKRGKDKVPAKEENVKTTRKIRIVYTDPDATDYSSEEDDKLLSNGYKLNDCSKRVVKEILLPSMQSKLQEDNSSQDVKSEKIKSSPEHCSSRRMRKPSSMYKGVQRRKWGKYVAEIRDPIQGVRVWLGTFDTEQEAAMAYERKKNEFESYLLASSKRDACENSKEVLFHPSPSSVLDVCTTKATLDVNDLNDSVKVKVNVEKVGEEGGIDAEAVNSEDNSTQYLLEEPVVPSLFGLDDFYLDEAEKRGMLLGNDFYNFLDNDMKGGFMWNVEHGEATVLPPVDSDFDELAWIDETLDWESS* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00181 315 MobiDBLite consensus disorder prediction 87 108 - -
Lapu4g00181 315 MobiDBLite consensus disorder prediction 1 31 - -
Lapu4g00181 315 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Lapu4g00181 315 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Lapu4g00181 315 SMART rav1_2 114 160 IPR001471 GO:0003700|GO:0006355
Lapu4g00181 315 ProSiteProfiles AP2/ERF domain profile. 114 172 IPR001471 GO:0003700|GO:0006355
Lapu4g00181 315 Pfam AP2 domain 115 162 IPR001471 GO:0003700|GO:0006355
Lapu4g00181 315 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 161 - -
Lapu4g00181 315 CDD AP2 113 156 IPR001471 GO:0003700|GO:0006355
Lapu4g00181 315 MobiDBLite consensus disorder prediction 12 31 - -
Lapu4g00181 315 Gene3D AP2/ERF domain 114 164 IPR036955 GO:0003700|GO:0006355
Lapu4g00181 315 MobiDBLite consensus disorder prediction 80 115 - -
Lapu4g00181 315 SUPERFAMILY DNA-binding domain 113 161 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00181 Lapu-Chr4 1822777 1823724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00181 33 172 AP2-EREBP Transcription Factor Family AT1G68550 42.361 5.11e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu4g00181 AP2 1.4e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00181 - - pvu:PHAVU_004G157600g 499.204