Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00156 ATGGATCTAGAAGACAAGTTCCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCATCTAGTGCACAAAGTACTCCTGAAAAAAATGGTCATTCAGATGATGCTTCAAGAAGTTCAGAACTTCTTCAGGAGTTCCTAAAACCTGGTCTTAAGAAGGAACTTCTACGAACTTGCTTTGATAAGGACAAAAAGAACATTTCTTCAAAAAGCAGGATGACTGAAACTAAGTCAACCAGTAAGATTGTCAAGAAACCGGACTCAAAAAAAGTTTCTGGTGTCAGCAATCAGTCTTCTAGGAAGCAACATCGCAAAGGAGAAAACCCTGTGCGGTTTGTACCAGTTCCTGACCCACCTAGTGATTTTGGACATTCAAGCTCCTGGATCTGTAAGAATTCTGCTTGTCGAGCAGTTCTCTCTAAAGATGATACATTTTGTAGAAGGTGCTCTTGCTGTATTTGCCACCTTTTTGATGATAATAAGGATCCTAGCCTTTGGTTGGTATGCACATGTGAATCTGCTCAAGGGGACTCCTGTGGATTGTCTTGCCATATTGAGTGTGCTCTTCAACATGAAAAAGTAGGAGTTGTTGATCATGGACAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACTGGGATACTTGGATGTTGGAAGAAGCAGCTAAGCATAGCAAAAGATGCTCGACGTGTAGATGTACTATGTTTCAGGATATATTTGAGCTACAGGCTTTTGGATGGAACTTCAAGATTTAAAGAATTGCATGAAATGGTAAAAGAGGCAAAGGCTAAACTGGAAACTGAAGTTGGTCCAGTTAATGGGGTTTCTGCCAAGATGGCACGTGGGATTGTCAGCAGACTCCCTATTGCTAGTGATGTCCAAAAACTCTGCTCTCTTGCTATTGAGAAAGCTGATGAGTGGTTGGCCACTGTTCCCAATATAAATCCAGAATGCAGAGAGGGTTCACTTCCCGCTGCCTGCAAGGTTGTGTATGAAGAGGTAACAGCTTCCTCAGTCAAAATAATTTTAATTGAAATGTCAAATGCATCTTCTGGGGACATTAAGGGATACAAGCTATGGTATTACAAGAGCAGGGAGGAATCACACACTAAAGATCCTGTTTGTGTTTTTCCCAAATCTCAGAGAAGGATTTTGTTATCCAACCTCCAACCTTGCACGGAATATACTTTTCGAATTGTATCTTTTACTGATACGGGTGACCTGGGTCACTCTGAGACTAAGTGTTTCACCAAGAGCGTTGAGATATTGGAAAAGAATTCATCTTCATCAGTTGCTGTGAATCAAAAAAAGGAGAACCTTCAAGCTGAATGCAATTCTTCTGGTTCCAAATTGGAGCCCAATCCCACATCCGCACACTCTGGATTTAAGGTTCGAGACCTTGGGAAAATCTTGCATCTTACTTGGGCTCAAGAACAAGGTAGCTTTGAGGGGTTTTGCTGTGCTGACAAGAGAAAATGCTGTGGGCAGAGTGAAACTATCAAGCCTAGCAAACCACAAGAGCAGTTGCCCTCAGTTTCACGTGACCTCGATCTAAATGTTGTTTCAGTGCCTGATTTGAACGAAGAACTGACACCTCCATTTGAGTCTTCCAGGGATGAAGATAACGGTTGTACCTTGCAGCAGGTTGTTGAGGCAGATGATGATGCTGCTTCTCATGATTTAGACAAAAACTTAGCAAGATCACATGGTAGTGGTGGTTCCCAAACATGGAACCATGGACAAACCGGCGAAGTTCCTGCTGTTGATTCACGTGGAGATGCAAGTAGGAAAAGGATAGCTAGCACAATTGAAGAGACACATGATTGTGACAGCACTTTGATAAATGGCTCTCCTTTACGCCCTGCTGATGGTCCATTCTCTTTAGATGAAAACTTTGAGTATTGTGTGAAAGTAATTCGCTGGTTAGAATGCCAGGGTCATATTAAGCAGGAATTTAGGTTGAAATTGCTGACATGGTTTAGTTTGAGGTCCACAGAGCAAGAACGAAGGGTGGTAAATACTTTCATTCAAACTCTGATTGATGATCCTAGTAGTTTGGCTGGGCAACTAGTTGACTCATTTTCTGATATTATATCCAACAAGAGGCCTAGAAATGGGTTCTGCAACAAAACTGTGACATCAAGTTAA 2160 0.4176 MDLEDKFLAKVSGVQSLSSSAQSTPEKNGHSDDASRSSELLQEFLKPGLKKELLRTCFDKDKKNISSKSRMTETKSTSKIVKKPDSKKVSGVSNQSSRKQHRKGENPVRFVPVPDPPSDFGHSSSWICKNSACRAVLSKDDTFCRRCSCCICHLFDDNKDPSLWLVCTCESAQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLSIAKDARRVDVLCFRIYLSYRLLDGTSRFKELHEMVKEAKAKLETEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWLATVPNINPECREGSLPAACKVVYEEVTASSVKIILIEMSNASSGDIKGYKLWYYKSREESHTKDPVCVFPKSQRRILLSNLQPCTEYTFRIVSFTDTGDLGHSETKCFTKSVEILEKNSSSSVAVNQKKENLQAECNSSGSKLEPNPTSAHSGFKVRDLGKILHLTWAQEQGSFEGFCCADKRKCCGQSETIKPSKPQEQLPSVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQVVEADDDAASHDLDKNLARSHGSGGSQTWNHGQTGEVPAVDSRGDASRKRIASTIEETHDCDSTLINGSPLRPADGPFSLDENFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKTVTSS* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00156 719 PANTHER VIN3-LIKE PROTEIN 2-RELATED 16 714 IPR044514 GO:0010048|GO:0040029
Lapu4g00156 719 ProSiteProfiles Fibronectin type-III domain profile. 329 426 IPR003961 GO:0005515
Lapu4g00156 719 MobiDBLite consensus disorder prediction 66 110 - -
Lapu4g00156 719 CDD FN3 332 421 IPR003961 GO:0005515
Lapu4g00156 719 SUPERFAMILY Fibronectin type III 330 412 IPR036116 GO:0005515
Lapu4g00156 719 MobiDBLite consensus disorder prediction 572 587 - -
Lapu4g00156 719 Pfam Fibronectin type III domain 336 413 IPR003961 GO:0005515
Lapu4g00156 719 MobiDBLite consensus disorder prediction 567 601 - -
Lapu4g00156 719 MobiDBLite consensus disorder prediction 13 28 - -
Lapu4g00156 719 Gene3D Immunoglobulins 323 425 IPR013783 -
Lapu4g00156 719 MobiDBLite consensus disorder prediction 13 40 - -
Lapu4g00156 719 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Lapu4g00156 719 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00156 Lapu-Chr4 1550943 1560381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00156 124 710 PHD Gene Family AT3G24440 48.833 0.0 530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00156 - - gmx:100780157 1361.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00156 4 1550943 1560381 Lapu4g00156 4 1550943 1560381 ECH
Lapu3g03819 3 61672623 61682283 Lapu4g00156 4 1550943 1560381 PCT