Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00135 ATGATGGAACACAACATCATCGGCAACACCAACAACGTGATCGCACCGTTTGTCATAAAAACCTACAACATGGTTAACGATCCCACCACCGATAAACTCATCACGTGGGGCCCAGCCAACAACAGCTTCATCGTTCTCGACCCCCTCGACTTCTCCCACTCACTCCTCCCTGCTTTCTTCAAGCACAACAACTTTTCCAGTTTCGTTCGCCAACTCAACACCTACGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAATTCGCGAACGAGTGGTTCCTGCGGGGGCAGAAGCATTTGTTGAGGAACATCGTGCGGCGGAAGCACGGCGGAGGGAGGAACAACAATTCGCAGTCGCATTTTTATCCCCTGAAGCTGGAGGAGTTGGACGACGAGGCCATGGTGATGGAGATAGCGAGGTTGAAGGAGGAGCAGAAAGCGTTGGAGGAAGAGCTGCAAGGAATGAACAAGAGGTTAGAGACAACGGAAAAACGACCGCAACAAATGATGGCTTTTCTGTCAAAGGTTGTCGAAGACCCGCAGGTTCTCTCTCGGATTCTGCGAGAAAGAGAAAAAAAACACCTCGGCGAGAAAAAGCGACGCCTCATTCCGCCGCCTTCTACGGCGGCGACCTCTTCCTCCTCCTCCTCCGGCATCAAGACGGAGTTCGATGAAGACGACTGTAACAATATCATGTCTTCACCGCCGGAGACGGTTTTGGAAATCGATAATAATATTTGTTCGCCGGCGATGGCGGGGTGTTGGGGGGAACAGGGGTGTTTCGGGTATAATTGCGGCGTAGTGACGACGCCTTTGACGGTGGTTACGCCGGCGGCGCCGGCGATGGGGGGAGGGTATTTGGGGCGTGGGAGTTTTTTTGGGGAAATGGCGGCGGAGGGGAGTGCGCTGCCGCCTTATCCGTTTTCTCTGTTGGAAGGTGGGTTTTAG 945 0.5365 MMEHNIIGNTNNVIAPFVIKTYNMVNDPTTDKLITWGPANNSFIVLDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLRNIVRRKHGGGRNNNSQSHFYPLKLEELDDEAMVMEIARLKEEQKALEEELQGMNKRLETTEKRPQQMMAFLSKVVEDPQVLSRILREREKKHLGEKKRRLIPPPSTAATSSSSSSGIKTEFDEDDCNNIMSSPPETVLEIDNNICSPAMAGCWGEQGCFGYNCGVVTTPLTVVTPAAPAMGGGYLGRGSFFGEMAAEGSALPPYPFSLLEGGF* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00135 314 PRINTS Heat shock factor (HSF) domain signature 68 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00135 314 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00135 314 PRINTS Heat shock factor (HSF) domain signature 55 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00135 314 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 14 223 IPR027725 -
Lapu4g00135 314 Pfam HSF-type DNA-binding 17 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00135 314 Gene3D - 9 107 IPR036388 -
Lapu4g00135 314 SMART hsfneu3 13 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu4g00135 314 SUPERFAMILY "Winged helix" DNA-binding domain 14 106 IPR036390 -
Lapu4g00135 314 FunFam Heat stress transcription factor B-4 9 107 - -
Lapu4g00135 314 Coils Coil 125 164 - -
Lapu4g00135 314 MobiDBLite consensus disorder prediction 193 219 - -
Lapu4g00135 314 ProSitePatterns HSF-type DNA-binding domain signature. 56 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00135 Lapu-Chr4 1332876 1334241 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00135 13 314 HSF AT3G24520 47.761 2.38e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu4g00135 HSF_DNA-bind 4.9e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00135 K09419 - gmx:100794896 521.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00135 4 1332876 1334241 Lapu4g00135 4 1332876 1334241 ECH