Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00129 ATGTCAACAGCTCCAGCGCCGTCATCGCCGCCGTCCAACAACACCGCGCCTCCGCCGTCCACTCCGGCGGCACCGCCGCCCTCTACACCTTCCGCACCGCCTCCAGCCACTCCGTCGTCACCTCCACCATCACCTCCGTCGTCGCCGCCTCCGGCAACACCCTCCGCGCCTCCGCCGGCGACACCTTCTTCGCCACCTCCGGCTACTCCCTCCGCTCCTCCACCGTCCACTCCTTCGACTCCAACCCCGCCGTCAACCACACCACCATCGAGTTCTCCTCCCTCGCCTCCGTCGACTTCTCCTCCGTCTCCGCCGTCGGATTCTCCACCTTCTCCACCGAGTAGCGGCGGCGGAGGCAACACTCCGAGTCCACCGTCTCGGAGCTCGCCTCCTCCTCCATCCGGATCGAATCGGACCACGCCTTCGCCTCCGACGTCGTCGTCGTCTTCGTCGGGTATTTCGACTGGCGTCGTGGTCGGAATCGCCGTTGGGGCCGTCGCGGTTCTTGTTGTGTTAAGCATTCTCTGCATATGCTGTCGGAAGAAGAAGAGAAGACGCGACGAGGAGTACTATGCTCCGCCGCCGCAGCAACCGCTGCGGGGACCCAAAGATGATTATGGTGGACCCCCACGTCAATGGCAACACAATGTTCCCCCTCCTCAAGATCATGTGGTTTCAATGATGCCTCCAAAGCCATCGCCTCCTCCGGCTCCGGCTTATGCTGCTCAACCTCCTCCTCCTCCGCCTCCTTTCATCATCAGCAGTGGTGGGTCTGGATCAAACTATTCAGGTGGAGAACCACTTCCTCCTCCTTCTCCAGGAATTTCATTGGGGTTCTCTAAGAGCACTTTTACCTACGAGGAGTTGGCACGCGCAACCGATGGATTCTCTGATGCGAACCTCCTTGGACAAGGTGGATTTGGATATGTTCACAGAGGAATTCTTCCCAATGGCAAGGAGGTGGCAGTGAAGCAACTGAAGGCTGGAAGTGGGCAAGGGGAGCGTGAGTTCCAGGCTGAAGTTGAGATAATTAGCCGTGTCCATCACAAGCATCTTGTATCTTTGGTTGGATATTGCATCACTGGGTCCCAGAGGTTGCTTGTTTATGAATTTGTTCCAAACAACACATTGGAGTTCCATTTGCATGGAAGAGGACGACCTACCATGGATTGGTCCACAAGACTAAGAATTGCTTTAGGATCTGCTAAGGGACTGGCATATCTTCATGAAGATTGTCATCCTAAGATCATCCATCGTGACATCAAATCTGCTAACATCCTTCTGGATTTTAAGTTTGAAGCAAAGGTGGCAGATTTCGGTCTTGCTAAGTTTTCTTCTGATGTTAATACTCATGTTTCTACACGAGTGATGGGGACATTTGGGTATCTGGCTCCAGAATATGCATCTAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCATATGGAGTCATGCTGCTGGAGTTAATAACTGGACGACGGCCAGTTGATAAAACTCAAACATTCATGGAGGATAGTTTGGTAGACTGGGCTAGACCTTTGCTCACACGAGCTTTGGAAGAGGATGATTTTGACTCTATTATTGACCCAAGGCTTCAGAATGATTATGACCCTAATGAGATGGCACGAATGGTGGCATGTGCCGCAGCTTGCACACGTCATTCGGCAAAGCGCCGACCAAGGATGAGCCAGGTTGTGCGTGCTCTGGAAGGAGATGTGTCTCTAGCAGATCTTAACGAAGGAATCAAACCTGGACACAGCACTATGTACAGTTCTCATGAAAGCTCAGATTATGATACTGTACAGTACAGGGAAGACATGAAAAAGTTCAGAAAAATGGCTTTGGGAACTCAGGAATATGGTGCAAGCAGCGAGTACAGTGCAGCAACAAGTGAGTATGGTTTAAACCCATCTGGCTCAAGCAGTGAAGCACAGAGCCGCCAAACCACAAGGGAAATGGAAATGAGAAAGATGAAGAACAGTCAAGGTTTCAGTGGAAGCTCTTGA 2007 0.5217 MSTAPAPSSPPSNNTAPPPSTPAAPPPSTPSAPPPATPSSPPPSPPSSPPPATPSAPPPATPSSPPPATPSAPPPSTPSTPTPPSTTPPSSSPPSPPSTSPPSPPSDSPPSPPSSGGGGNTPSPPSRSSPPPPSGSNRTTPSPPTSSSSSSGISTGVVVGIAVGAVAVLVVLSILCICCRKKKRRRDEEYYAPPPQQPLRGPKDDYGGPPRQWQHNVPPPQDHVVSMMPPKPSPPPAPAYAAQPPPPPPPFIISSGGSGSNYSGGEPLPPPSPGISLGFSKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSQRLLVYEFVPNNTLEFHLHGRGRPTMDWSTRLRIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAKVADFGLAKFSSDVNTHVSTRVMGTFGYLAPEYASSGKLTDKSDVFSYGVMLLELITGRRPVDKTQTFMEDSLVDWARPLLTRALEEDDFDSIIDPRLQNDYDPNEMARMVACAAACTRHSAKRRPRMSQVVRALEGDVSLADLNEGIKPGHSTMYSSHESSDYDTVQYREDMKKFRKMALGTQEYGASSEYSAATSEYGLNPSGSSSEAQSRQTTREMEMRKMKNSQGFSGSS* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00129 668 FunFam Proline-rich receptor-like protein kinase PERK1 372 580 - -
Lapu4g00129 668 FunFam proline-rich receptor-like protein kinase PERK1 274 371 - -
Lapu4g00129 668 MobiDBLite consensus disorder prediction 185 276 - -
Lapu4g00129 668 MobiDBLite consensus disorder prediction 619 668 - -
Lapu4g00129 668 MobiDBLite consensus disorder prediction 620 648 - -
Lapu4g00129 668 SMART serkin_6 296 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00129 668 ProSitePatterns Serine/Threonine protein kinases active-site signature. 416 428 IPR008271 GO:0004672|GO:0006468
Lapu4g00129 668 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 164 631 IPR047117 -
Lapu4g00129 668 SUPERFAMILY Protein kinase-like (PK-like) 271 569 IPR011009 -
Lapu4g00129 668 ProSitePatterns Protein kinases ATP-binding region signature. 302 324 IPR017441 GO:0005524
Lapu4g00129 668 ProSiteProfiles Protein kinase domain profile. 296 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00129 668 MobiDBLite consensus disorder prediction 10 139 - -
Lapu4g00129 668 Gene3D Phosphorylase Kinase; domain 1 276 371 - -
Lapu4g00129 668 MobiDBLite consensus disorder prediction 223 253 - -
Lapu4g00129 668 Pfam Protein tyrosine and serine/threonine kinase 301 569 IPR001245 GO:0004672|GO:0006468
Lapu4g00129 668 PRINTS Proline rich extensin signature 10 26 - -
Lapu4g00129 668 PRINTS Proline rich extensin signature 54 75 - -
Lapu4g00129 668 PRINTS Proline rich extensin signature 31 43 - -
Lapu4g00129 668 Gene3D Transferase(Phosphotransferase) domain 1 372 580 - -
Lapu4g00129 668 MobiDBLite consensus disorder prediction 1 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00129 Lapu-Chr4 1222696 1226984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00129 109 651 Trihelix Transcription Factor Family AT1G70460 49.909 4.95e-176 516
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lapu4g00129 PK_Tyr_Ser-Thr 5.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00129 - - gmx:100781944 864.374