Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00114 ATGGATCCTCGAGGCAAGAGTTGGAGCATTGACACGCGCTCCGAGATAACTGCCAAGTACGAGGTTATCGGTTGGGTCGGGTCGGGCGCCTACGCCGACGTGTACGAGGGACTGCGCCGCTCGGACGGTGCCGCGGTGGCGCTGAAGGAGGTGCACGATTCCCAATCGGCGTCTCGCGAAATCGAAGCCCTGCGGGTCCTGAAAGGGTCCCAAAACGTGGTCGTTCTGCACGAGTTCTTCTGGCGCGAGGACGAGGACGCCGTTCTCGTGCTCGAGTTTCTCGGAACCAACCTCGCCACCGTGATCGGAGAAGGTGGTGTCGGCGTCTGTGAGGTTAAGAGGTGGATGGTGATGGCTCTGAGTGCTGTGGATGAGTGCCACCGGAATATGATCGTGCATAGGGACTTAAAACCAGCAAATTTTTTAGTTTCCGATGATGGGGTGCTCAAGTTAGCAGATTTTGGACAGGCAAGGATACTTGCGGAGTCTGGATTCGATGCTCCCCAGGAAGATGATGATGTTTCAAGTAGTGAAAGCTCATTCCAACAACATCCTGAAGCTATTTCCCAACCAGACAACTTAAATCAAACTGGACATGAAAACCGATATCAGAGAACTGTGAGTCATGAAGAATATTTCAGAGTTTTAGATGAAATGAAAACCAAGAGCTACTCGTATGACACGGACAAGGAAACAAATATCCATGATGGAAACACCTCATGTCTTGCAACATGCACAACGAGTGACATGGATGATGAACTTTGCAAAGGTTCTTTTTCTTACGAAGCTGAGGAGGTGGGAGGGAATGAACTTGGTTGTCTCACATCATGTGTTGGAACACGCTGGTTTCGAGCTCCTGAGTTACTATATGGATCCACAGACTACGGTTTAGAGGTTGATCTTTGGTCATTGGGGTGTGTTTTTGCTGAACTCTTAACATCGAAGCCATTGTTTCCTGGAACAAGTGATGTAGACCAGCTTAGCAGAATTGCTAGTGTTTTGGGGAACATTAATGAGGAAACTTGGCCTGGTTGTTCCAAACTTCCTGATTATGGAAATATCTCTTTTGGTCAGGTGGAAAAGCCTAGTGGTCTTGAAGCATGCATGCTCAATTGCACCCTTGATGAAGTTTCCCTAGTTAAAAGACTGGTTTGTTATGATCCAGTTAAGAGAGCCACAGCAATGGAGTTACTTCAAGACAAGTACTTAAGTCAAATACCGCTTCCAGTTCCAATTTCTGAGTTGCGGTTTCCTTTGACTGGTATTGGAAAAGACCAGGATCTCCCTGGTGGGTACAAGGAAATGGGTTCTGATTCTGATTTGGAGGAGTTTGGAACTTTGAATATTACCACAACTGATTCTGATTTATCTATACAAATCCCTTGA 1386 0.4704 MDPRGKSWSIDTRSEITAKYEVIGWVGSGAYADVYEGLRRSDGAAVALKEVHDSQSASREIEALRVLKGSQNVVVLHEFFWREDEDAVLVLEFLGTNLATVIGEGGVGVCEVKRWMVMALSAVDECHRNMIVHRDLKPANFLVSDDGVLKLADFGQARILAESGFDAPQEDDDVSSSESSFQQHPEAISQPDNLNQTGHENRYQRTVSHEEYFRVLDEMKTKSYSYDTDKETNIHDGNTSCLATCTTSDMDDELCKGSFSYEAEEVGGNELGCLTSCVGTRWFRAPELLYGSTDYGLEVDLWSLGCVFAELLTSKPLFPGTSDVDQLSRIASVLGNINEETWPGCSKLPDYGNISFGQVEKPSGLEACMLNCTLDEVSLVKRLVCYDPVKRATAMELLQDKYLSQIPLPVPISELRFPLTGIGKDQDLPGGYKEMGSDSDLEEFGTLNITTTDSDLSIQIP* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00114 461 FunFam Cyclin-dependent kinase F-1 11 105 - -
Lapu4g00114 461 MobiDBLite consensus disorder prediction 174 198 - -
Lapu4g00114 461 ProSiteProfiles Protein kinase domain profile. 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00114 461 SMART serkin_6 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00114 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lapu4g00114 461 PANTHER CELL DIVISION PROTEIN KINASE 19 407 - -
Lapu4g00114 461 Gene3D Phosphorylase Kinase; domain 1 11 105 - -
Lapu4g00114 461 MobiDBLite consensus disorder prediction 167 198 - -
Lapu4g00114 461 Pfam Protein kinase domain 274 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00114 461 Pfam Protein kinase domain 20 164 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00114 461 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Lapu4g00114 461 Gene3D Transferase(Phosphotransferase) domain 1 106 410 - -
Lapu4g00114 461 SUPERFAMILY Protein kinase-like (PK-like) 15 409 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00114 Lapu-Chr4 1110465 1113122 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00114 7 461 Core Cell Cycle Gene Families AT4G28980 57.415 0.0 546
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Lapu4g00114 Pkinase 5.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00114 - - gmx:548056 775.393
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00114 4 1110465 1113122 Lapu4g00114 4 1110465 1113122 ECH