Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00108 ATGAATAGAGGTGTTCTTCAGAGCTCACCAGTGCAACAAATGATCACTGGAAACCCTAACTGGTGGAACATCAATATCAATACCATGCCTCCTCAAGCTCCTCCTTTCTTCTCCACTCCTTCAAACTTTCCCACCCCTTATGCTCCCACTTCTCTTCCCTTTCCTTCTTGGAATGAGAATCAAGACCTTCCTGACTCATGGAGCCAACTACTCATGAGTGGGGTGGTGGATGAACAAGGTAAGGTTGGGATGGGCCAGTTTCAGACCAAGAAGTTGGAGAACTGGGAGGATCAAATGCTTGGTCAGGCTCCAAACGCTTCTCTTGTTGATGTTAAACAAGAAAATTCGGTTAACAGCTATGTATATGGCCGTGGAAACGAAGAACTTCAGTCATCAAAGCCAACTTGGTCTCCAAAATCCTGTGTCACAAGTTTCAGTAGCAACATGTTAGATTTCTCTAACTGTAGCACAGATGTAAGGCATCCACCACCAGATCGATCTTCTGAGTGCAATAGCACTGCAGCTGGTGGGGCACTCAAGAAAGCTAGGGTTCAACCCTCTGCTACAACACAGGCTACATTCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACAGCCCTTCATCAGCTCGTTTCCCCATTTGGGAAGACTGACACAGCTTCTGTCTTGTTAGAAGCTATTGGGTATATCAGATTCCTTCAGAGTCAAATTGAGGCGCTTAGCTTACCATACTTGAGTGGTGGACCAGGAAGTGGGAGGCCGCAGAATTCTGTTCAAGGAGAGAAGAATTGTATATTTCCTGAAGACCCTGGTCAGCTGCTGAATGAGAACTGCTTGAAAAGGAAAGCAGCTGGAGAACCGGATACTCAAGAAGAACAAAAGAAGGGGCTGAGGAGTAGAGGGTTGTGTCTGGTTCCGGTGTCATGCACACTGCAAGTTGGGAGTGACAATGGAGCAGACTATTGGGCTCCTGCCCTAGGAGGGGGCTTTCGTTAG 999 0.4695 MNRGVLQSSPVQQMITGNPNWWNININTMPPQAPPFFSTPSNFPTPYAPTSLPFPSWNENQDLPDSWSQLLMSGVVDEQGKVGMGQFQTKKLENWEDQMLGQAPNASLVDVKQENSVNSYVYGRGNEELQSSKPTWSPKSCVTSFSSNMLDFSNCSTDVRHPPPDRSSECNSTAAGGALKKARVQPSATTQATFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLSGGPGSGRPQNSVQGEKNCIFPEDPGQLLNENCLKRKAAGEPDTQEEQKKGLRSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFR* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00108 332 Gene3D - 185 243 IPR036638 GO:0046983
Lapu4g00108 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 195 245 IPR036638 GO:0046983
Lapu4g00108 332 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 79 314 - -
Lapu4g00108 332 FunFam transcription factor bHLH68 isoform X1 192 245 - -
Lapu4g00108 332 CDD bHLH_AtbHLH_like 193 242 IPR045239 -
Lapu4g00108 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 185 234 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00108 Lapu-Chr4 1074642 1079654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00108 1 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 44.444 5.17e-68 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00108 - - gmx:100786555 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00108 4 1074642 1079654 Lapu4g00108 4 1074642 1079654 ECH
Lapu3g03791 3 61388219 61393000 Lapu4g00108 4 1074642 1079654 PCT