Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00107 ATGTCTGTGCCATTGGAGCAAGGCTATGTAGGCTTATCGGAGGTTCCTGCAATGGAAGGTTCTGACAAGTTTACTCAGAGGACTAGCGGTGGCTTGAACCTCAAGGCTACCGAGCTGAGACTTGGTTTACCAGGTTCTGAATCACCAGAGAGAGATGAGGGTGTGGAGGAAAAGAATGTACACCCTTTAGGCATGGTCAAGAGTTTGGTGTCTGGGGCCAAGAGGGGTTTCTCAGACACCATTGATGGGGGTTCTGGGAAGTGGCTTCTCTCTGGGAATGGTGGATCTGAGGTGGGTTTGGGAAAAGATTGTGGCTTGTTCTCACCAAGGGGTGTTGGTGCTAGCGCTGGCAAGGCTGAGTCTACCAACCAACAAACGTCTGTTGTAAAAGATAAAGTTCCTCTGTCTCCAAAGCCATTGAATGAGAAGAAACCTCAGATATCTGCTCCAGCTGCAAAGGGCTATTCCTTCTATGTTAATCATGATATAGGTTATTTTGGTTCTTCTGTAAATTTTCTTCTTCATCTTGATTATGAAGCATGGCTATCTCAGGAACAGGTTGTGGGATGGCCACCAATCCGATCTTTCAGGAAGAACTCAATGGCCACTCAGCCTCAAAAGAATGATGATGATGCAGAAGCCAAGTCTGGATGCCTTTATGTGAAAGTTAGCATGGATGGTGCTCCATACTTGAGGAAAGTGGATCTCAAAAACTTTGGCACTTACATGGAACTGTCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTGAGTTGTGTTTTTCTTTACTAGCAATTTGCAATCAAAGTTGTTGTTACCTTCTTACTATACTATCATGCACAGCTTTCAAATTTCATGCAGGTCAATGTGGTTCTCATGGAGTTTCTGGTCGAGATAAGTTGAGTGAAAGTAGATTGATGGATCTCCTTCATGGTTCGGAATATGTTCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGTGATGTCCCATGGGAGATGTTCACTGACTCATGCAAGAGGTTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGGTGAGGCTGACACATACAACTATGTGCTTTTCTTTTATGTCTTGTCGTAG 1122 0.4394 MSVPLEQGYVGLSEVPAMEGSDKFTQRTSGGLNLKATELRLGLPGSESPERDEGVEEKNVHPLGMVKSLVSGAKRGFSDTIDGGSGKWLLSGNGGSEVGLGKDCGLFSPRGVGASAGKAESTNQQTSVVKDKVPLSPKPLNEKKPQISAPAAKGYSFYVNHDIGYFGSSVNFLLHLDYEAWLSQEQVVGWPPIRSFRKNSMATQPQKNDDDAEAKSGCLYVKVSMDGAPYLRKVDLKNFGTYMELSSALEKMFSCFTISELCFSLLAICNQSCCYLLTILSCTAFKFHAGQCGSHGVSGRDKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGLGEADTYNYVLFFYVLS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00107 373 Gene3D - 212 363 - -
Lapu4g00107 373 ProSiteProfiles PB1 domain profile. 218 351 IPR000270 GO:0005515
Lapu4g00107 373 Pfam AUX/IAA family 37 358 IPR033389 -
Lapu4g00107 373 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 32 356 IPR003311 GO:0005634|GO:0006355
Lapu4g00107 373 MobiDBLite consensus disorder prediction 117 131 - -
Lapu4g00107 373 SUPERFAMILY CAD & PB1 domains 215 350 - -
Lapu4g00107 373 MobiDBLite consensus disorder prediction 115 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00107 Lapu-Chr4 1041923 1045719 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu4g00107 AUX_IAA 2.2e-77 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00107 K14484 - gmx:100803754 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00107 4 1041923 1045719 Lapu4g00107 4 1041923 1045719 ECH
Lapu3g03789 3 61332363 61335743 Lapu4g00107 4 1041923 1045719 PCT