Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00099 ATGGAACGCATCATCGGCGCCAAGTACAAGCTAGGTCGCAAGATCGGAAGCGGATCCTTCGGCGAAATCTACCTCGCGACGCATATTGATACCTTCGAAATCGTGGCGGTCAAGATCGAGAACAGTAAAACGAAGCATCCGCAATTGCTTTACGAGGCCAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATCCCGAGCATAAAATGGTGTGGTGTAGACGTAGAGGATAATGTGCTTGTTATGGATTTGCTGGGACCTAGTCTTGAGGATCTTTTTGTTTACTGTGGAAGAAAGTTCTCCCTCAAAACCGTGTTGATGTTAGCTGATCAAATGATGACTAGAATTGAATATGTGCATTCTAAAGGATTCCTACACAGGGATATAAAACCTGACAACTTTCTCATGGGACTTGGTCGTAAGGCAAACCAGGTTTACATAATTGATTTTGGGCTTGCAAAACGATATAGGGACTCCACAACTAATCGCCACATTCCTTACAGGGAGAACAAAAACTTAACAGGGACTGCACGCTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTCGACGGGATGATTTGGAGTCACTTGGGTATGTGCTTCTGTATTTTCTCAGAGGAAGTCTTCCTTGGCAAAACCTAAAGGCTGCAACAAAGAAGCAAAAGTATGATAAAATATGTGAGAAGAAAGTAGCAACTCCTATTGAGGTTTTATGCAAATCTCATCCTGTAGAGTTTGCTTCGTACTTTCATTACTGTCACTCTCTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAAGCGGCTATTCAGGGATCTGTTTGCTCGAGAAGGATATGAATTTGATTATGTATTTGATTGGACTATTTTAAAGTACCAGCAGGCACAAAAGAATAGAGTCCAGCCTCGCATGCCTACTGTCCCTGGAGCAAGCATCAGTCCTGCAATGCCTATGGATGTGGACAACAATCGAGGTATTAATGCTTATTCAGGGGATGTCTCAGCAGAACGCATTAAATCAGGCAACGTTACAGGTTCTGGTGTTAGAATTCAGTTTAAATCACCTGGGATAAAAAATTTGGGTTCTGAAAAGCCTCTTGACAAGAATATTTTTGGTGAAGCAAATATACCCTCTACCTCATACTCTCTTGCTGGCACCTCAAAACGGAACTCTTTGAAGCCTGCCTTGTCCACTGAAGCTACCAACCCAGTACATGGGCAAGGAAGTAATAAAATTGGCCCTTCAAGTAGCTGGATTTCATCTGTGCAGCGCATATCTTCTGCGAAATGA 1299 0.4288 MERIIGAKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSIKWCGVDVEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVATPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFAREGYEFDYVFDWTILKYQQAQKNRVQPRMPTVPGASISPAMPMDVDNNRGINAYSGDVSAERIKSGNVTGSGVRIQFKSPGIKNLGSEKPLDKNIFGEANIPSTSYSLAGTSKRNSLKPALSTEATNPVHGQGSNKIGPSSSWISSVQRISSAK* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00099 432 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lapu4g00099 432 MobiDBLite consensus disorder prediction 397 432 - -
Lapu4g00099 432 CDD STKc_CK1_delta_epsilon 8 282 - -
Lapu4g00099 432 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00099 432 FunFam Casein kinase I isoform delta-like 1 340 - -
Lapu4g00099 432 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lapu4g00099 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lapu4g00099 432 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00099 432 PANTHER CASEIN KINASE-RELATED 8 346 - -
Lapu4g00099 432 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00099 432 Gene3D Transferase(Phosphotransferase) domain 1 1 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00099 Lapu-Chr4 917111 922636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00099 9 213 EF-hand Containing Proteins AT4G23650 29.858 4.15e-14 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lapu4g00099 Pkinase 1.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00099 K08960 - gmx:100798768 825.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00099 4 917111 922636 Lapu4g00099 4 917111 922636 ECH
Lapu3g03785 3 61285525 61292941 Lapu4g00099 4 917111 922636 PCT