Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00095 ATGGGTTGCATTTACTCGCGAGTGTGCATAGGCGATAACTGCAGAGGCTCCAGCATCAACGGAGATCCCATCGCCAGAACCACTGACGTAGGCGAAGTCGCCAATTTCTCCCCAACCTCTTCCGACGTCGAAGAAGGCGAAATCAGAGACCAGCTCAACCAGTTGAGCATCACCAGAGACTCTGAAGCTGGAATCCGAAGACTCGCTAGGGTTTCAGCGCAGTTCCTTCCGCCGGACGGTTCGCGAATCGTCAAAGTACCTTCTGGAAACTTCGAATTGCGATACTCCTTCCTGTCCCAGCGAGGTTACTACCCCGATGCACTCGATAAAGCTAACCAGGACAGTTTCTGCATCCACACACCTTTCGGTACGAACCCTAACGACCACTTTTTTGGTGTCTTCGACGGCCATGGTGAGTTTGGAGCTCAGTGCTCGCAGTTCGTGAAGCGGAAATTGTGTGAGAATTTGCTCAGAAACTCCAAATTCCGCGGTGATCCTGTTGAGGCTTGTCATGCGGCATTTTTGGCCACGAATTCGCAGCTTCATGCTGATGTTTTGGATGACAGCATGAGCGGGACGACGGCGATCACCGTGCTGGTGAGGGGGAGGACGATATACGTGGCGAATTCCGGCGATTCGAGGGCGGTGATGGCGGAGAGGAGAGGGAAGGAAATTGTGGCCGTTGATTTGTCGATTGATCAGACGCCGTTTAGGAGTGATGAGCTTGAGAGGGTGAAGCTCTGTGGGGCGAGGGTTCTTACTTTGGATCAGATTGAGGGTTTGAAGAACCCTGATGTGCAGTGTTGGGGCACTGAGGAGGGTGATGATGGTGACCCTCCGAGGTTGTGGGTGCCCAATGGGATGTACCCGGGGACGGCTTTCACCAGGAGTATTGGTGATTCTATTGCGGAGACCATTGGGGTTGTGGCGAATCCTGAGATTGTCGTGTTTGAGCTCACGCAGGATCACCCTTTCTTTGTGCTTGCTAGTGATGGGGTGTTTGAGTTTCTCTCGAGCCAGACTGTGGTTGAAATGGTTGCAAAATTCAAAGATCCTCGTGATGCTTGTGCAGCAATTGTGGCAGAATCGTATCGACGCTGGCTGCAATATGAAACTCGTACAGATGACATTACAGTCATCATTGTGCATATAAATGGGCTAAGTGAATCTACTGTTGGTCAGTCGGCTAGTTATGGTGATGTTTTGCGAAACCCTGTGCCACAAGTTGTAGAGGTGACAGGTTCAGAATCCCCTTCCACCTTTGGCTGGAGTGCTAGAAACCATCGTGTAAGACATGACTTGTCAAGGGCACGCCTCCGAGCACTTGAAAATTCCCTAGAAAATGGGCAAGCTTGGGTTCCTCCGTCTTCAGCCCACAGAAAGACATGGGAAGAAGAAGCACACATAGAGCAGGCTTTGCACGATCATTTTCTCTTCCGAAAACTTACCGATTCTCAGTGTCATGTTTTATTGGATTGCATGCAAAGAGTGGAGGTCGAACCTGGGGATATTATAGTCAAACAGGTCAGTTTTCTAGGTGGTGAAGGTGACTGTTTTTATGTTGTTGGTAGTGGAGAATTTGAGGTCTTGGCAACTCAGGAAGAAAAAGAAGGGGATGTACCTAGAGTTTTTCAGCGCTACACAGCTGAAAAACTCTCATGTTTTGGAGAACTTGCTCTGATGTACAATAAACCACTCCAGGCTTCTGTACGTGCTGTAACAAAAGGAACGCTTTGGGCTTTAAAACGAGAAGATTTTCGTGGGATTTTAATGTCAGAATTCTCTAACTTATCATCATTAAAGTTGCTTCGGTCTGTAGATCTCCTCTCGAGGTTATCAATTTTACAACTCAGTCAGATTTCTGACTCCCTTTCTGAAGTTTCCTTCTCAAATGGGCAGACAATAATAGACAAAAATGAAATCCTTGCATTGTACATTATACAGAAGGGACGAGTAAAAATCACTTTTGATTCTGATTTATTGACAAGTCCAAATGCCTACAGCCTGAAGCCTGACATCCAAAACGAGGAGGATGATGTGCAGGGCAGAAGTGAACTATCAATAGAGAAGCCCGAGGGAAGCTATTTTGGTGAATGGGCCCTTTATGGTGAACGTATCGGTTCCATAAGTGCTGTTGCTGTGGGTGATGTTGTATGTGCTTTACTAACAAAGGACAAATTTGAATCTGTTATTGGCTCCTTACAAAAGATTTCTCAGGAAGATCACAAGTCAAGGGACAATTCCAAGGAGTTGACTAGAAATTATGATTTTTCATCCCTTGATAAAGTCCAGCTCTCAGATTTGGAGTGGAGAAAGACACTATATTCCACTGACTGTTCCGAAATAGGGCTTGCAAATTTAAAAGAATCAGAAAAATTGCTTACTTTGAAGAGATTTTCTAAGCCAAAGGTGAAAAGGCTTGGAAAGGAATCACAAGTCTTGAAAGAGAAAGATTTGATTAAGGGTTTGTGCTCTTCAGCTAGTATACCACAGGTTTTATGCACTTGTGCTGATCGCATGTATGCTGGAATACTGCTAAATACTCGCCTTGCTTGCCCTTTGTCTTCCATACTTTCAAGTCCTTTTAGTGAATCAGGAGCACAGTTTTGTGCTGCTTCTGTTGTTACTGCCTTAGAAGACTTGCACAAGAATGGTGTTCTCTACAGAGGTGTGTCACCTGATGTTTTGATGTTGGACCAAACAGGACAGATACAGCTGGTGGACTTCAGATTTGGAAAACAGCTTTCTGGTGAGAGAACATTCACAATTTGTGGGATGGCAGATTCTCTGGCTCCAGAGATTGTTTTGGGAAAAGGACATGGTTTCCCTGCGGACTGGTGGGCATTGGGGGTTTTAATATATTTTATGTTACGTGGTGAGATGCCATTTGGATCATGGAGAGAAAATGAACTTGATACAGTTGCCAAAATTGCAAAAAGGAAGCTACATCTTCCCGAGACTTTTAGCTCTGAAGCGGTTGATCTCATCTCCAAGCTACTTGAAGTGGAAGAAAACAATAGACTTGGAAGCCAAGGTCCTGATTCTGTCAAGAGTCACCCATGGTTTAATGGTATTGAATGGGAAGGGATTAGAAACCACGCTTTTCCTGTTCCTCAGGAAATTATTCATCGTATAACACAGTACTTGGAAGTTCATTCTGAGGCTTGTAGTACTGGCTATCCGGGCTCACCTTTACAGGAGGTAGAAGAACTTAATGTGCCTGAATGGCTTGAGGACTGGTAG 3243 0.4561 MGCIYSRVCIGDNCRGSSINGDPIARTTDVGEVANFSPTSSDVEEGEIRDQLNQLSITRDSEAGIRRLARVSAQFLPPDGSRIVKVPSGNFELRYSFLSQRGYYPDALDKANQDSFCIHTPFGTNPNDHFFGVFDGHGEFGAQCSQFVKRKLCENLLRNSKFRGDPVEACHAAFLATNSQLHADVLDDSMSGTTAITVLVRGRTIYVANSGDSRAVMAERRGKEIVAVDLSIDQTPFRSDELERVKLCGARVLTLDQIEGLKNPDVQCWGTEEGDDGDPPRLWVPNGMYPGTAFTRSIGDSIAETIGVVANPEIVVFELTQDHPFFVLASDGVFEFLSSQTVVEMVAKFKDPRDACAAIVAESYRRWLQYETRTDDITVIIVHINGLSESTVGQSASYGDVLRNPVPQVVEVTGSESPSTFGWSARNHRVRHDLSRARLRALENSLENGQAWVPPSSAHRKTWEEEAHIEQALHDHFLFRKLTDSQCHVLLDCMQRVEVEPGDIIVKQVSFLGGEGDCFYVVGSGEFEVLATQEEKEGDVPRVFQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDSLSEVSFSNGQTIIDKNEILALYIIQKGRVKITFDSDLLTSPNAYSLKPDIQNEEDDVQGRSELSIEKPEGSYFGEWALYGERIGSISAVAVGDVVCALLTKDKFESVIGSLQKISQEDHKSRDNSKELTRNYDFSSLDKVQLSDLEWRKTLYSTDCSEIGLANLKESEKLLTLKRFSKPKVKRLGKESQVLKEKDLIKGLCSSASIPQVLCTCADRMYAGILLNTRLACPLSSILSSPFSESGAQFCAASVVTALEDLHKNGVLYRGVSPDVLMLDQTGQIQLVDFRFGKQLSGERTFTICGMADSLAPEIVLGKGHGFPADWWALGVLIYFMLRGEMPFGSWRENELDTVAKIAKRKLHLPETFSSEAVDLISKLLEVEENNRLGSQGPDSVKSHPWFNGIEWEGIRNHAFPVPQEIIHRITQYLEVHSEACSTGYPGSPLQEVEELNVPEWLEDW* 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00095 1080 SUPERFAMILY cAMP-binding domain-like 600 735 IPR018490 -
Lapu4g00095 1080 SMART PP2C_4 90 382 IPR001932 -
Lapu4g00095 1080 CDD PP2Cc 110 384 IPR001932 -
Lapu4g00095 1080 Gene3D Phosphorylase Kinase; domain 1 766 852 - -
Lapu4g00095 1080 ProSiteProfiles Protein kinase domain profile. 768 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00095 1080 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 89 386 - -
Lapu4g00095 1080 SMART cnmp_10 478 605 IPR000595 -
Lapu4g00095 1080 SMART cnmp_10 608 746 IPR000595 -
Lapu4g00095 1080 Pfam Protein kinase domain 785 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00095 1080 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 464 1041 - -
Lapu4g00095 1080 Pfam Protein phosphatase 2C 121 365 IPR001932 -
Lapu4g00095 1080 Pfam Cyclic nucleotide-binding domain 627 731 IPR000595 -
Lapu4g00095 1080 Pfam Cyclic nucleotide-binding domain 497 592 IPR000595 -
Lapu4g00095 1080 ProSiteProfiles cAMP/cGMP binding motif profile. 478 591 IPR000595 -
Lapu4g00095 1080 SUPERFAMILY Protein kinase-like (PK-like) 756 1053 IPR011009 -
Lapu4g00095 1080 Gene3D Transferase(Phosphotransferase) domain 1 853 1038 - -
Lapu4g00095 1080 SUPERFAMILY cAMP-binding domain-like 459 592 IPR018490 -
Lapu4g00095 1080 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169
Lapu4g00095 1080 CDD CAP_ED 478 591 IPR000595 -
Lapu4g00095 1080 Gene3D Jelly Rolls 452 597 IPR014710 -
Lapu4g00095 1080 ProSiteProfiles cAMP/cGMP binding motif profile. 608 748 IPR000595 -
Lapu4g00095 1080 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 598 747 - -
Lapu4g00095 1080 SMART serkin_6 776 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu4g00095 1080 CDD CAP_ED 608 732 IPR000595 -
Lapu4g00095 1080 FunFam Protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 452 596 - -
Lapu4g00095 1080 SUPERFAMILY PP2C-like 82 387 IPR036457 -
Lapu4g00095 1080 Gene3D Jelly Rolls 598 751 IPR014710 -
Lapu4g00095 1080 ProSiteProfiles PPM-type phosphatase domain profile. 94 384 IPR001932 -
Lapu4g00095 1080 Gene3D - 89 385 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00095 Lapu-Chr4 876438 895136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00095 1 1080 PP2C-type Phosphatase Gene Family AT2G20050 68.812 0.0 1513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Lapu4g00095 Pkinase 1.5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00095 - - gmx:100799821 1990.7