Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00094 ATGGCAGGGAGTTCATCAAACCCAGGGAGGGCAAAAAGCGTGATTGAAGGAAACAAAGGCGCAAAGGAAATCCAATTCAACGATGAGTTGCAGCTGGAGTTCATACTTGATGCGGGAATTGTGAAAGATTGCGAGTTGAGTTTGCCATATGGGGTGCAATTGACCAATGACAAGTGGAACTTGTTCTTGCCATTGCAAGGGTTCGAAGAAACCCTAATAGGGTTGTTGAAGGAGGAAGAAGATGTGAGGGAGGGGATTCAAGTGAACGTGTACGACAGAGGAGGCCATGAATTCGAAATGATGCTGAAGAAATGGGTGAAGGACTCGAATCAGTTCTATGTGCTGAACAGAGGGTGGTTCACTTTCTGCAACCAACATGGTTTGGGGCAAGATGATCTCATAGCTTTGCGTGGCTTTCGCCATGCCATAACTGACATGTTGTCTTTTGTTGTTACTTTCAGAACAATGAGGTAA 474 0.4536 MAGSSSNPGRAKSVIEGNKGAKEIQFNDELQLEFILDAGIVKDCELSLPYGVQLTNDKWNLFLPLQGFEETLIGLLKEEEDVREGIQVNVYDRGGHEFEMMLKKWVKDSNQFYVLNRGWFTFCNQHGLGQDDLIALRGFRHAITDMLSFVVTFRTMR* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00094 157 SUPERFAMILY DNA-binding pseudobarrel domain 60 151 IPR015300 -
Lapu4g00094 157 Pfam B3 DNA binding domain 79 138 IPR003340 GO:0003677
Lapu4g00094 157 ProSiteProfiles B3 DNA-binding domain profile. 87 157 IPR003340 GO:0003677
Lapu4g00094 157 CDD B3_DNA 83 154 IPR003340 GO:0003677
Lapu4g00094 157 Gene3D - 53 156 IPR015300 -
Lapu4g00094 157 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 76 152 IPR005508 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00094 Lapu-Chr4 876438 876911 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00094 46 153 B3 DNA Binding Superfamily AT4G03170 29.825 3.52e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu4g00094 B3 6.8e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00094 - K10737 pvu:PHAVU_004G169500g 182.956