Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00093 ATGGCAGAGGGCTCATCAAATGATGCAGGGAAGGGAAAAGCCGTTGTTGAAGACAAAGAATCTGAGAGAGAGTTCCTTTACAAGGACGAGTTGCAGCTGGAGTTCGTGTTCAACATTGGTCATGTGAAAGACTTCGAGTTGAGCATGCCATATAGGGCACAACTGACCAACGACAAGTGGAACCTGTTCCTGCGTGTGCCCTACTTCGAAGATATCCTCTTGCAGTTCTTGAAAGAGGAAGAAGATGTCAAAGAGGGACTCCCAGTGACCGTGTATGACAAAGGGGGGCATGAGTTCCCAATGATGCTCAAGAAATTTGACAAAGATTCCATCGCTTACTATGTGCTGAATCGAGGGTGGTTCAATTTCTGCGACCAAAAGCGCTTGCAGGAAAACGATGTTGTCGCATTGAGAACTTTTCGCCATGCAATAACTGACAAGTTATCCTTCGTTGTTACTTTCACAAAAGTGAGGTAA 477 0.4549 MAEGSSNDAGKGKAVVEDKESEREFLYKDELQLEFVFNIGHVKDFELSMPYRAQLTNDKWNLFLRVPYFEDILLQFLKEEEDVKEGLPVTVYDKGGHEFPMMLKKFDKDSIAYYVLNRGWFNFCDQKRLQENDVVALRTFRHAITDKLSFVVTFTKVR* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00093 158 Pfam B3 DNA binding domain 74 139 IPR003340 GO:0003677
Lapu4g00093 158 ProSiteProfiles B3 DNA-binding domain profile. 89 158 IPR003340 GO:0003677
Lapu4g00093 158 Gene3D - 15 158 IPR015300 -
Lapu4g00093 158 CDD B3_DNA 75 156 IPR003340 GO:0003677
Lapu4g00093 158 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 74 154 IPR005508 GO:0003677
Lapu4g00093 158 SUPERFAMILY DNA-binding pseudobarrel domain 76 146 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00093 Lapu-Chr4 871541 872017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00093 24 156 B3 DNA Binding Superfamily AT4G03170 29.496 3.17e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lapu4g00093 B3 8.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00093 - K21085 pvu:PHAVU_004G169500g 279.256