Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00090 ATGGTCGACCCAGCACCTTCCTCAGAATCAGACACACTAAACACCCTTAGTTCTACTTCTTCACCATCGTCGTCATCGTCCACTTCCAAGAAACGAGGCAGAAACAGCGACAACAATGGTAATAGTAACGAAACCAAGCATTCCGTTTATAGAGGAGTCAGAATGCGCACGTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGCGAAAGAAGAACCGAATCTGGCTCGGCACCTTCGCCACCGCCGAGATGGCGGCGCGTGCGCACGACGTGGCCGCGCTCACCATAAAGGGCTCCTCTGCCATCCTTAACTTCCCCGAACTCGCCGCCTCGCTGCCGCGCCCCGCCTCCAACTCCCCCCGCGATGTGCAGGCCGCTGCCGCCAAGGCCGCCTCCATGGAGGCGCCGCCGCGTAGCCCTCCCTCTCCCGCCGCCGCACCGGAGGACGACCTCGGCGAGATTGTGGAGCTGCCGCCGCTGGGGTCTAGCTTCGACTCGCCCGACCCGAATACGGAGTTCGTGTTCCTCGACCCGGATGAAGGGTGGCCATATCCTCACCCGTGGTATCACGGCATTTATGACGGTGGGTACTTCATCGGTGACATGAACATGGTTTCAATGCAAGAGTCAGAAGGCATGGTTCTTTCCTTGTGGCCTTGA 660 0.597 MVDPAPSSESDTLNTLSSTSSPSSSSSTSKKRGRNSDNNGNSNETKHSVYRGVRMRTWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDVAALTIKGSSAILNFPELAASLPRPASNSPRDVQAAAAKAASMEAPPRSPPSPAAAPEDDLGEIVELPPLGSSFDSPDPNTEFVFLDPDEGWPYPHPWYHGIYDGGYFIGDMNMVSMQESEGMVLSLWP* 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00090 219 SUPERFAMILY DNA-binding domain 48 107 IPR016177 GO:0003677
Lapu4g00090 219 MobiDBLite consensus disorder prediction 7 48 - -
Lapu4g00090 219 Pfam AP2 domain 48 98 IPR001471 GO:0003700|GO:0006355
Lapu4g00090 219 Gene3D AP2/ERF domain 49 107 IPR036955 GO:0003700|GO:0006355
Lapu4g00090 219 ProSiteProfiles AP2/ERF domain profile. 49 106 IPR001471 GO:0003700|GO:0006355
Lapu4g00090 219 FunFam Ethylene-responsive transcription factor 2 48 107 - -
Lapu4g00090 219 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 161 - -
Lapu4g00090 219 SMART rav1_2 49 112 IPR001471 GO:0003700|GO:0006355
Lapu4g00090 219 CDD AP2 48 108 IPR001471 GO:0003700|GO:0006355
Lapu4g00090 219 MobiDBLite consensus disorder prediction 113 149 - -
Lapu4g00090 219 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Lapu4g00090 219 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Lapu4g00090 219 MobiDBLite consensus disorder prediction 1 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00090 Lapu-Chr4 849905 850766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00090 5 188 AP2-EREBP Transcription Factor Family AT5G11590 52.657 2.18e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu4g00090 AP2 1.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00090 K09286 - gmx:100804801 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu4g00090 4 849905 850766 Lapu4g00090 4 849905 850766 ECH
Lapu3g03777 3 61206352 61207845 Lapu4g00090 4 849905 850766 PCT