Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00079 ATGGTGGCGTTGGTCATCACAAGATTGAAGAGGGAACAATGCGACCGCACAAAACACGATTCCAGCTTCTCCCATTGGAAGATTCTGATTGGCCCTTCTGATTGGGAAGACCATTCCAAAGGAAAGGAAGGGTGTGCGAGATACAGGATTCACAACCTCCCTCAAGAATCGAATCCAGGGGTGTATGAGCTTGGAATTGCTGTGTCCAGTGGTGGTTTGGGGCGTCAAATTTCCAAGCTTGTCGATCACCCTGACCGCATAGTGGTGGTTTACCTTGGACAAGCTGACAATGTGAGAACAAGACTCCAGCGTTATGGCAGAACTGGGGCTCACTTGGACAGTGTCTGTTCGGATGATTCTTCTCTTCAAAAGGGGCGCCCCTTGTTTCAGGAGGTGTTTTCACAAGGATTCTCAATCGTTTATAGATGGGCTCCTATGCAAAACAAGGAAGATGCCCTGCGAACAGAAGCTCAGCTGCTCAGTACATTTGATTATGCATGGAACACAAGCAATAATGGTATTCGGAGACCTGAAGAAATTCTTCAAAAACTTCAAAAAATGGCTTCAGGCACTAGAACACTTTCAGATGTGGCCAAAGTGCTACTACCATTCACTCAGAAGCAAGTGGGCATCCGAATTAAATCAAGCAAGCTACCTCAGGCAGATGACAAGTTACATGAAGCAGACAATGGCAGCTATAATTTCCTATCTCGAGTATTCAGTTTTAACAGATCACGTCCTAGGATAGTTCAAAGTATCACTGGTGTCGTTCAGGAACAGGAGAATGCTAAAATTTGTGGAGTGTCATTGGGTGATGGTTTAATTTGTAGAAGGCCACCAGCTGAGAAAAGATTGAGGTGTTCTGAACACAAGGGAATGAGAGCTTATGTTTCCATTGCCGAAGCAATCAGGGTACCCAAGTCAGAGAGCAATGTTTCACAAACAGTGGTTGGGAGTCCTGTTGATGAAAGTCTGACAAACACCAATATATGTGGAATCATCTTAAATGATGGCTCCACCTGTAGAAGGCAACCAGTTAAAGGAAGGAAAAGGTGTCATGAGCACAAAGGGAGGAGAATTGGTGCATCTATTCAAAAAAATGGCAACGGATACAGATACCAAAATGTCAGCCATGATGTAAAAGATCCTCTACAAACACTGGTAGGGAGTCCTGTTGATGAGAGTATCTCAAACACAAATATATGTGGAATCATCTTAAATGATGGCTCTGCCTGTACAAGACAACCAGTTAAAGGAAGAAAAAGGTGCCATGAGCACAAAGGGAGAAGAAATCGTGCATCTTTTCAAGTAAATCAGAAATAA 1323 0.4369 MVALVITRLKREQCDRTKHDSSFSHWKILIGPSDWEDHSKGKEGCARYRIHNLPQESNPGVYELGIAVSSGGLGRQISKLVDHPDRIVVVYLGQADNVRTRLQRYGRTGAHLDSVCSDDSSLQKGRPLFQEVFSQGFSIVYRWAPMQNKEDALRTEAQLLSTFDYAWNTSNNGIRRPEEILQKLQKMASGTRTLSDVAKVLLPFTQKQVGIRIKSSKLPQADDKLHEADNGSYNFLSRVFSFNRSRPRIVQSITGVVQEQENAKICGVSLGDGLICRRPPAEKRLRCSEHKGMRAYVSIAEAIRVPKSESNVSQTVVGSPVDESLTNTNICGIILNDGSTCRRQPVKGRKRCHEHKGRRIGASIQKNGNGYRYQNVSHDVKDPLQTLVGSPVDESISNTNICGIILNDGSACTRQPVKGRKRCHEHKGRRNRASFQVNQK* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00079 440 SMART uri_9 77 173 IPR000305 -
Lapu4g00079 440 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 387 434 IPR038909 GO:0003677|GO:0006355
Lapu4g00079 440 MobiDBLite consensus disorder prediction 418 440 - -
Lapu4g00079 440 Pfam GIY-YIG domain-containing protein 23 181 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00079 2 430 HRT Transcription Factor Family AT5G56780 39.545 7.85e-101 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Lapu4g00079 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00079 - - gmx:100784450 609.372