Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00060 ATGGGAAGGGCTCCATGCTGTGACAAATCTATCGTCAAAAGAGGACCATGGTCTCCTGATGAAGATGCCACCCTCAAAAACTACCTTGAGAAACATGGCACTGGTGGTAATTGGATAGCTCTCCCCAAAAAAGCAGGGCTTAAGCGTTGTGGAAAGAGCTGTCGTCTAAGATGGCTGAACTATCTCAGGCCTCATATTAAGCTTGGAGCTCAACTGCCCGGGAGAACAGACAATGATGTGAAAAATCACTGGAACTCCAAGCTAAAGAAAAAGTTCTTAGCAGGAAACGCTAGTAGTACTGTTTCCACAAGCTACAACAATGGCACTGTCAGCAATACTAGTTACTCTGACCAATTCTCATCTTTCACTCTTCAACCTCAAGTTGAGGCCTTTGTCTTGAATCAGAAACTGAACTCAGCTTGGTTTGACTCCTACAATATTTTGGATCTGGAACAAACACCAATTGCAGTTCCTCTTCCAATGCCTCAGGAATTAGAAGCATTTAATACTGGGGGGAGTAGTTACACTGCACCACCCTCTAAGGAAGTTTCAATGCCAATTTCCAATGCAGCTTCATTAGCAGAGCAGAACAAGCATAGACAATGGTTTGACTATGAGTATGCAGGTGAAGATGATCCAAATTTGCTTGAATTTGTGCTTGACGATCTGCTGATTAATCATGAGTTTGCATCTCCTGATCACAAAAGCAGCCAGGTTGCTCCATCATGTCTGGCTAACCAAGACTCATTCCACTCATCAAAAACCTGA 768 0.4336 MGRAPCCDKSIVKRGPWSPDEDATLKNYLEKHGTGGNWIALPKKAGLKRCGKSCRLRWLNYLRPHIKLGAQLPGRTDNDVKNHWNSKLKKKFLAGNASSTVSTSYNNGTVSNTSYSDQFSSFTLQPQVEAFVLNQKLNSAWFDSYNILDLEQTPIAVPLPMPQELEAFNTGGSSYTAPPSKEVSMPISNAASLAEQNKHRQWFDYEYAGEDDPNLLEFVLDDLLINHEFASPDHKSSQVAPSCLANQDSFHSSKT* 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00060 255 Gene3D - 68 114 - -
Lapu4g00060 255 CDD SANT 16 62 IPR001005 -
Lapu4g00060 255 MobiDBLite consensus disorder prediction 233 255 - -
Lapu4g00060 255 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lapu4g00060 255 Gene3D - 7 67 - -
Lapu4g00060 255 FunFam Transcription factor RAX3 7 68 - -
Lapu4g00060 255 SUPERFAMILY Homeodomain-like 14 89 IPR009057 -
Lapu4g00060 255 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lapu4g00060 255 PANTHER OS09G0431300 PROTEIN 70 160 - -
Lapu4g00060 255 SMART sant 13 64 IPR001005 -
Lapu4g00060 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 92 IPR017930 -
Lapu4g00060 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00060 Lapu-Chr4 645570 646839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00060 1 94 MYB Transcription Factor Family AT5G57620 63.025 2.83e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lapu4g00060 Myb_DNA-binding 1.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00060 K09422 - gmx:778160 332.028