Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00059 ATGATGCTCGGAGAGCACCATCGTGCAAATCCAACGGTCCACGTTCCACCGTGGCCAACCCATGATGATCCAACAGCTGAGATGTACTCCGCGTTTTTAACTAACGACGTGAATGCTGCCGAGTACTCTCCGTACTATCTTCAAGAAGCGTTAACGGCGCTGCAGCGCTACCTTCCGTCCAACGAAACAGACGCTGACTCGGACTCGGAGGCTCAACCCGACGCGCCGGTCGACGCGTACTCCTGCGACCATTTCCGCATGTACGAGTTCAAGGTCCGTCGATGCGCGCGTGGCAGGTCCCACGACTGGACTGAGTGTCCGTACGCGCATCCCGGGGAGAAGGCGCGCCGCCGCGACCCGCGCAAGTACCACTATTCCGGCGCGGCGTGCCCTGATTTCCGTAAGGGGAGCTGCAAGAAAGGCGATACCTGCGAGTTCGCGCACGGCGTCTTCGAGTGCTGGCTGCACCCAGCGCGCTACCGCACGCAGCCGTGCAAGGACGGAACAAGCTGCCGCCGGCGCGTGTGTTTCTTCGCGCACACGCCGGAGCAGCTGCGCCTCGTCCCGATGCAGAGTCCTCGTAGCTCGGGGGAGTCCTATGACGGTTCTCCGATGAGACAGGTTCTACCGGCTTCTGCGTTCATGTCGTCACCTGCGGCTTCTATTTCTCCGCCGGAGTCTCCACCTGTGTCGCCTTCAATGAACGAGATGGTGGCTTCTCTGCGTAATCTGCAGCTGGGGAAGATGAAATCGATGCCTCATAACCGAAACGTTTCTGTTGGGTCCCCGGGTTACGGATCACCGAGAGGGTCTGTTCTTCGACCCGGGTATTTTAGTCTTCCGACAACGCCAACTCAGCAACCGGTTCGGTCGGGAGTGAACTATTTGGATGTGTGGGAGCAGGGTTGTGAGGAGGAACCGGTTATGGAGAGGGTGGAGTCTGGGAGGGGCATAAGGGCGAGGATGTTTGAGAAGCTAAGCAAAGAGAACTCTCTGGAGGGTTCGGGTCAGGGTCAGGGTCAGGGAAGTGGGGCTCCGGATGTTGGGTGGGTTTCGGAGCTGGTGAAGTGA 1071 0.5929 MMLGEHHRANPTVHVPPWPTHDDPTAEMYSAFLTNDVNAAEYSPYYLQEALTALQRYLPSNETDADSDSEAQPDAPVDAYSCDHFRMYEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGAACPDFRKGSCKKGDTCEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPMQSPRSSGESYDGSPMRQVLPASAFMSSPAASISPPESPPVSPSMNEMVASLRNLQLGKMKSMPHNRNVSVGSPGYGSPRGSVLRPGYFSLPTTPTQQPVRSGVNYLDVWEQGCEEEPVMERVESGRGIRARMFEKLSKENSLEGSGQGQGQGSGAPDVGWVSELVK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00059 356 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Lapu4g00059 356 FunFam Zinc finger CCCH domain-containing protein 66 82 150 - -
Lapu4g00059 356 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 128 149 IPR000571 GO:0046872
Lapu4g00059 356 Gene3D - 124 187 - -
Lapu4g00059 356 PANTHER UNKEMPT FAMILY MEMBER 48 356 IPR045234 -
Lapu4g00059 356 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Lapu4g00059 356 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Lapu4g00059 356 MobiDBLite consensus disorder prediction 327 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00059 Lapu-Chr4 636292 638478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00059 73 258 C2H2 Transcription Factor Family AT5G12850 50.000 2.13e-60 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu4g00059 zf-CCCH 1.3e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00059 - - gmx:100778184 646.736