Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00055 ATGAGTAAGATCAGCAACTTGAGTTCTGTAAGCAGTTCTGATCTCATAGATGCCAAGCTTGAAGAGCATCAATTGTGTGGATCCAAGCAGTGCCCCGGTTGCGGACACAAGTTTGAAGGGAAGCCGGACTGGCTAGGCCTGCCAGCAGGAGTGAAGTTTGATCCCACAGACCAAGAACTAATAGAACATCTTGAAGCCAAAGTGGAGGCAAAGAACATGAAATCACACCCTTTGATAGATGAGTTCATTCCCACTATTGAAGGAGAAGACGGAATTTGTTATACCCATCCGGAGAAACTTCCAGGAGTAACTAGAGATGGATTGAGCAGGCACTTCTTCCATAGACCTTCAAAGGCTTACACAACTGGGACAAGAAAGAGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGTGGAGAAACCCGGTGGCACAAGACTGGTAAGACCAGGCCAGTGATGGTGAATGGAAAACAAAAGGGTTGCAAGAAAATTCTTGTCCTCTACACCAACTTTGGAAAGAACAGAAAGCCAGAGAAAACCAACTGGGTGATGCACCAATACCATTTGGGGCAGCATGAAGAAGAGAAAGAGGGAGAGCTTGTGGTGTCAAAGATATTCTATCAGACACAGCCAAGACAGTGCAACTGGTCAGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAACAGTAGTAGAAGGGACAGTGGAAGTGGAAGTTGTTCTTCCAAAGAAATTGTTACTCACAGAGATGAGATGTCTGCTGTTGTTGGTGTCCCTCCAATGACAAGTTTCACTCATCATCCCTTGGACATTCAGCATCTAAAACCCGATCACTTTAGCTTCATCCCTTTCAGGAAAAGCTTTGATGAGGTTGGAATGGGAGAGGCTTCCACAGCAAGGGAAGTAGTGCAAGCATCAGGTTCATGTGAAGAAGTGCATGAACGGCAGAGAGCACAACATGTAGCTCATCATCATCATCATCAACAACAACAACATCAACAGCATGCTCATCATCAGATTTCAAACTCAGCTTTTCATATCAGTAGGCCGTCACATCCCATCTCTACCATTATCTCTCCACCTCCCCTCCACCATACTTCTATCATTCTCGACGACAACTCTTACCATGTCTCTAGAATAATGCTCCAGAATGAAAATTTCCAGCAACAACAGCAACAACATCATAAGCTAGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATCATGGGTTGCACTTCAACTGAAATCAAAGAGCAGGAGTCATCCATCACAAACCCACAAGAAGCTGAATGGTTGAAGTACTCTTCTTATTGGCCAGACCCTGACAACCCGGATCATCATGGGTAG 1359 0.4503 MSKISNLSSVSSSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKNMKSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNSSRRDSGSGSCSSKEIVTHRDEMSAVVGVPPMTSFTHHPLDIQHLKPDHFSFIPFRKSFDEVGMGEASTAREVVQASGSCEEVHERQRAQHVAHHHHHQQQQHQQHAHHQISNSAFHISRPSHPISTIISPPPLHHTSIILDDNSYHVSRIMLQNENFQQQQQQHHKLGGRSASGLEELIMGCTSTEIKEQESSITNPQEAEWLKYSSYWPDPDNPDHHG* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00055 452 SUPERFAMILY NAC domain 43 208 IPR036093 GO:0003677|GO:0006355
Lapu4g00055 452 MobiDBLite consensus disorder prediction 316 344 - -
Lapu4g00055 452 Pfam No apical meristem (NAM) protein 48 189 IPR003441 GO:0003677|GO:0006355
Lapu4g00055 452 ProSiteProfiles NAC domain profile. 47 208 IPR003441 GO:0003677|GO:0006355
Lapu4g00055 452 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 10 337 IPR044799 GO:0003700
Lapu4g00055 452 FunFam NAC domain-containing protein 73 56 212 - -
Lapu4g00055 452 MobiDBLite consensus disorder prediction 215 246 - -
Lapu4g00055 452 MobiDBLite consensus disorder prediction 322 336 - -
Lapu4g00055 452 Gene3D NAC domain 56 212 IPR036093 GO:0003677|GO:0006355
Lapu4g00055 452 MobiDBLite consensus disorder prediction 215 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00055 Lapu-Chr4 590624 596225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00055 11 449 NAC Transcription Factor Family AT5G56620 53.830 7.48e-143 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu4g00055 NAM 3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00055 - - gmx:100795246 799.66