Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00054 ATGGAGAATGGCTGCATTCTAGCTTTTCTCATCCTCATTCTACATTCAAGTACAACAAAAGCTGTCTTCAGTGTTGGTGGTGGTGTTGGTGTAGGTGTAGGTGTTGGTGTTGGCAATGGAAATGGTGGTGGTGGTGGCCATGGTGGAATGGTTTGGGTTGGAGGAGGGATTACCAGCCCAGAGCCCCCTGGATCTTCAGTGCCAAAGCCTGAAGGAGCTTACACAGCTCTCCAGGCTTGGAAATCCGCAATCACTGAGGATCCTCTTAACATTTTAGAAAGTTGGGTTGGTCCAAATGTGTGTTCTTACAAAGGAGTCTTCTGTGCAAATCCTCAAGATGAAATGGTTGCATCAGCATTCCCAGTTGTTGCAGGCATAGATCTCAACCATGCAAATCTGCAAGGAAGTCTTGTTAAAGAGCTCTCTCTACTCAGTGATTTGTCTCTTCTCCACCTCAACACTAACAGATTCACTGGCACTGTTCCTGATACATTCAGAGACCTGGTGTTTCTGGAAGAGTTAGACCTCAGCAACAACCAACTTTCAGGTCCTTTCCCTGCTGCTACGTTGTACATGCCAGGCCTCATCTACTTAGACCTCAGATTCAACTACTTCTCTGGGGCCCTTCCTGAGGAACTTTTCAGCAAGAATCTGGATGCAATATTCCTCAATAACAATCAATTTGAAGGTGAAATTCCCCAAAACTTGGGTAGTTCCCCAGCCTCGGTTATAAACCTGGCCAACAACAAGCTGAGTGGAAACATCCCAGCAAGTTTGGGTTTCATGGGTTCTAAAATAAAGGAGATTCTATTCCTCAATAACCAGTTAACTGGTTGCATCCCTGAGGGAGTGGGGCTATTCACAGAGATGCAAGTACTGGATGTGAGCTTCAACTCACTTATGGGCCATTTGCCAGACACGCTATCATGCCTGCAAGACATAGAAGTTCTCAACTTGGCTCATAACAAGCTCTCTGGGGAGTTATCAGACGTAGTCTGCTCTTTGAGAAGCCTCGCAAATCTAACTGTTGCTTACAATTTCTTTTCGGGGTTCAGCCAGCAATGCTCAAGGCTTTTCTTTAGGAACGTGGGTTTTGATTTCTCCCTAAACTGCATTCCTGGGAGGGACATGCAGAGACCTCAACCTGAGTGCTCTGTGATCCCAGGTGGTAGCCTCAGTTGTCTCAGAATCCCCACACCAAGGCCTCTTGTTTGTGGTTCAATGGCTGTAAGTAAGTCTAAGCACATTGATCCCATTTCACCATCTCCTTGA 1272 0.4623 MENGCILAFLILILHSSTTKAVFSVGGGVGVGVGVGVGNGNGGGGGHGGMVWVGGGITSPEPPGSSVPKPEGAYTALQAWKSAITEDPLNILESWVGPNVCSYKGVFCANPQDEMVASAFPVVAGIDLNHANLQGSLVKELSLLSDLSLLHLNTNRFTGTVPDTFRDLVFLEELDLSNNQLSGPFPAATLYMPGLIYLDLRFNYFSGALPEELFSKNLDAIFLNNNQFEGEIPQNLGSSPASVINLANNKLSGNIPASLGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMQVLDVSFNSLMGHLPDTLSCLQDIEVLNLAHNKLSGELSDVVCSLRSLANLTVAYNFFSGFSQQCSRLFFRNVGFDFSLNCIPGRDMQRPQPECSVIPGGSLSCLRIPTPRPLVCGSMAVSKSKHIDPISPSP* 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00054 423 Pfam Leucine rich repeat N-terminal domain 74 108 IPR013210 -
Lapu4g00054 423 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 61 400 - -
Lapu4g00054 423 Pfam Leucine rich repeat 147 204 IPR001611 GO:0005515
Lapu4g00054 423 Gene3D Ribonuclease Inhibitor 73 239 IPR032675 -
Lapu4g00054 423 PRINTS Leucine-rich repeat signature 171 184 - -
Lapu4g00054 423 PRINTS Leucine-rich repeat signature 311 324 - -
Lapu4g00054 423 Gene3D Ribonuclease Inhibitor 240 362 IPR032675 -
Lapu4g00054 423 FunFam Leucine-rich repeat extensin-like protein 1 74 238 - -
Lapu4g00054 423 SUPERFAMILY L domain-like 73 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00054 Lapu-Chr4 582999 585120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00054 68 396 Leucine-rich Repeat extension Gene Families AT3G24480 49.851 9.90e-106 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00054 - - gmx:100775544 735.332