Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00042 ATGTCAAACTTGCATTACATGTTCATCTGGTTAGCAGTTCTTCTTTTTCTGCAACATCCCAGCAGAGTACATTGCCATACCAAGGGAATTAGACCAAGACGTTCTGCGGGTAAAGGGTTGTCGACCAACATGACTAGAGTGCAGTATTCTGAAGAGCAATTCATGAAATGGGTGAACTTTGTTGGTTCCCTCAAACACTCAGTTTTTAAGGCAGCTAAAAATAAGCTTGTGGCTTCTTACAGTTTGCACGTTGATAAGGATCCTAGTGTTGGAGATTTTACCTCGATTCAAGATGCTATTGATTCCCTTCCATTCATCAATCTTGTGAGAGTGATCATAAAAGTCCATGCAGGTGTCTACACGGAGAAAGTTAACATTCCTGCTTTCAAATCCTACATAACAATAGAGGGAGCAGGTGCAGATGAAACCATTGTTAAATGGAGTGACACTGCTCAAACACCTGGTTCAAATGGGAGGCCACTAGGAACCTATGGATCAGCAACTTTTGCGGTGAATTCACCTTATTTCATTGCCAAGAACATCACATTCCAAAACACAACTCCTGTTCCTGCACCAGGAGCTATTGGAAAGCAAGCGGTGGCTTTGAGGATTTCAGCTGACACAGCAGCATTCGTAGGCTGCAAATTCTTAGGAGCACAAGACACACTCTATGATCATGTGGGCAGACATTACTACAAAGATTGCTATATTGAAGGCTCTGTTGATTTCATATTTGGCAACTCCCTCTCTCTATTTGAGGGATGTCACGTGCATGCGATAGCACAGAATACAGGGGCAGTAACAGCTCAAGGAAGGAGTAGTATGTTGGAGGACACAGGGTTCTCATTTGTGAACTGTAAGGTCACGGGATCTGGGGCACTATACCTTGGAAGGGCATGGGGACCCTTTTCTCGCGTGGTCTTTGCTTACACATATATGGACAATATCATCATTCCCAAAGGCTGGTATAACTGGGGTGACCCTAACCGTGAAATGACTGTTTTCTATGGGCAGTACAAGTGCACAGGAGCTGGTGCAAGTTTTGCAGGGAGAGTATCATGGTCAAGAGAACTCACTGATGAGGAAGCTATGCCTTTTCTTTCACTTGGCTTTATTGATGGGACTGAATGGATCAAATTGTAG 1143 0.4383 MSNLHYMFIWLAVLLFLQHPSRVHCHTKGIRPRRSAGKGLSTNMTRVQYSEEQFMKWVNFVGSLKHSVFKAAKNKLVASYSLHVDKDPSVGDFTSIQDAIDSLPFINLVRVIIKVHAGVYTEKVNIPAFKSYITIEGAGADETIVKWSDTAQTPGSNGRPLGTYGSATFAVNSPYFIAKNITFQNTTPVPAPGAIGKQAVALRISADTAAFVGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNSLSLFEGCHVHAIAQNTGAVTAQGRSSMLEDTGFSFVNCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGAGASFAGRVSWSRELTDEEAMPFLSLGFIDGTEWIKL* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00042 380 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 74 379 - -
Lapu4g00042 380 FunFam Pectinesterase 78 380 - -
Lapu4g00042 380 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Lapu4g00042 380 Gene3D - 77 380 IPR012334 -
Lapu4g00042 380 SUPERFAMILY Pectin lyase-like 78 379 IPR011050 -
Lapu4g00042 380 Pfam Pectinesterase 90 374 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00042 Lapu-Chr4 489306 493400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00042 2 378 Carbohydrate Esterase AT5G47500 44.180 2.30e-103 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00042 K01051 - gmx:100793314 728.783