Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu4g00041 ATGTTCCATGGACAAGGTTTTTGTCATGTTGCACCATTTCTTGCATTGAGGCCAGCAATGGGGCGAGCCACTAGGTGGATTAAGAGTTTGTTCGGGATTACAAGAGAGAAAGAGAAGAAACAAAACTCAAAGAGTGGAGAAGCTAACAGCATGGATCCGGGTTGTTCTGAGAGTACTAGTAATTCAAGCGTTTTGTGTCACAATCCTGGAACTATACCTCCCAACATTTCTCAAGCTGAGGCAGCTTGGTTACAGTCATTCTACACAGAGAAGGACAAAAACAAGCATGCCATTGCAGTTGCTGCCGCCACTGCAGCTGCTGCTGATGCTGCCGTGGCGGCAGCGCAGGCTGCTGTAGCAGTTGTTAGACTCACAAGCCAAGGAAGGGGTGGCGCCATGTATGGTTTTGGACCTGAGATATGGGCTGCTATCAAGATTCAAGCAGTGTTTAGAGGATACCTGGCAAGGAAGGCACTGAGGGCATTAAGAGGATTGGTGAAGTTGCAGGCACTTGTCAGAGGGTTTTTAGTGAGGAAGCAAGCAACAGAAACCCTGCATAGTATGCAGGCTCTTGTTAGAGCTCAAGCAACAATACGGTCCCACCAATCTCGCAGGCTCATGTGTACAAAGAATGAAGCATTTAGATCTCAAAATAGAGCAAGAAGATCCATGGAGAGGTTTGATGATACTAGGAGTGAGTATGTAGTTCCTATCCACAGTAGAAGAGCATCATCTTCTTTTGATGCTACCATTAACATCAACAACAGTGTTGATGGGAGCCCCAAAATAGTGGAAATGGACACTTTCAGGCCTAAGTCAAGGTCAAGAAGGACAATATCAGATTTTGGTGATGAGCCATCACTTCAGGCACTTTCCTCTCCCTTCTTCCCAATTTCATATAGAGGTACCCCTACATGTTCGTCCATACCAGACCAAAGGAATTTTCAGGACTCTGAATGGGGGTTAACAGGAGAAGAATGTAGGTTCTCTACAGCACAAAGCACTCCACGCTTCACAAATCCTTGTAGTTGTGGCTCAGTTGCACCCATGACACCACAAAGTGTGTGTACTGATAACTTGTTCCTAAGGCAATATGGGAAATTTCCAAACTACATGGCTAGTACTCAGTCTTTTAAGGCTAAGTTGAGGTCTCATAGTGCTCCAAAGCAACGGCCAGAACCAGGTCCAAGGAAAAGGCTCTCCCTCAATGAAATGATGGAATCTAGAAGTAGCTTGAGTGGTGTTAGAATGCAGAGGTCTTGCTCAAAGGCTCAAGAAGTCATTAATTTCAAGAATGCTGTGATGGGAAAGCTTCAGAAATCCACAGAATCTGTTAGGGAGACAGACAGAAACTATTTCCACCAGAGAAGGTGGTGA 1377 0.4532 MFHGQGFCHVAPFLALRPAMGRATRWIKSLFGITREKEKKQNSKSGEANSMDPGCSESTSNSSVLCHNPGTIPPNISQAEAAWLQSFYTEKDKNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGGAMYGFGPEIWAAIKIQAVFRGYLARKALRALRGLVKLQALVRGFLVRKQATETLHSMQALVRAQATIRSHQSRRLMCTKNEAFRSQNRARRSMERFDDTRSEYVVPIHSRRASSSFDATININNSVDGSPKIVEMDTFRPKSRSRRTISDFGDEPSLQALSSPFFPISYRGTPTCSSIPDQRNFQDSEWGLTGEECRFSTAQSTPRFTNPCSCGSVAPMTPQSVCTDNLFLRQYGKFPNYMASTQSFKAKLRSHSAPKQRPEPGPRKRLSLNEMMESRSSLSGVRMQRSCSKAQEVINFKNAVMGKLQKSTESVRETDRNYFHQRRW* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu4g00041 458 Pfam Protein of unknown function (DUF4005) 335 416 IPR025064 -
Lapu4g00041 458 ProSiteProfiles IQ motif profile. 142 167 IPR000048 GO:0005515
Lapu4g00041 458 SMART iq_5 161 182 IPR000048 GO:0005515
Lapu4g00041 458 SMART iq_5 138 160 IPR000048 GO:0005515
Lapu4g00041 458 MobiDBLite consensus disorder prediction 37 62 - -
Lapu4g00041 458 Pfam IQ calmodulin-binding motif 141 160 IPR000048 GO:0005515
Lapu4g00041 458 Pfam IQ calmodulin-binding motif 166 180 IPR000048 GO:0005515
Lapu4g00041 458 Gene3D - 116 165 - -
Lapu4g00041 458 ProSiteProfiles IQ motif profile. 187 216 IPR000048 GO:0005515
Lapu4g00041 458 ProSiteProfiles IQ motif profile. 163 190 IPR000048 GO:0005515
Lapu4g00041 458 PANTHER IQ-DOMAIN 5-RELATED 20 413 - -
Lapu4g00041 458 MobiDBLite consensus disorder prediction 46 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu4g00041 Lapu-Chr4 484341 486615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu4g00041 20 417 IQD Protein Family AT3G16490 50.976 1.77e-95 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu4g00041 - - gmx:100788710 663.299